Oratosquilla oratoria (Japanese mantis shrimp): 143037454
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Entry
143037454 CDS
T11268
Symbol
Sym
Name
(RefSeq) symplekin scaffold protein isoform X1
KO
K06100
symplekin
Organism
oot Oratosquilla oratoria (Japanese mantis shrimp)
Pathway
oot03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oot00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
143037454 (Sym)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oot03021
]
143037454 (Sym)
03019 Messenger RNA biogenesis [BR:
oot03019
]
143037454 (Sym)
Transcription machinery [BR:
oot03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
143037454 (Sym)
Messenger RNA biogenesis [BR:
oot03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
143037454 (Sym)
U7-dependent histone pre-mRNA processing factors
143037454 (Sym)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Adaptin_N
ATRIP_mid
TAFH
Motif
Other DBs
NCBI-GeneID:
143037454
NCBI-ProteinID:
XP_076061812
LinkDB
All DBs
Position
22:28410836..28491137
Genome browser
AA seq
1115 aa
AA seq
DB search
MSDTEVSTRDRVVELLNQATLLTSEKEKISNLSQVQELIVHKEPQLLDSFYEEVAVFQTD
RNSDVRKYVVGFIEEACKKDKEMLPRLIPNLQLLMADEAMVVVKRVVQASTQLYRIVLSW
LSNTRTITQEMEQTWLIMTAIKTDIIGMIDHDNDGVRTQAIKFLEALVLIQTYTEADSIK
RDNEFNLDHVPLTLKIARPRKLEEEARMVLGRLISFQGSIHISSVNLMTCMSSLTIIAKG
RPQFMGKVINALKKLYVNLPPTLTRSQVNSVRKHLKIQLLNLLKHTAAYDYHEDITTLLN
DIGVTATEVNKSMPSKDDIKNRVKRERLTEERADNRERPKREPPSKRARLEPEVKEDPIF
NKLENEEDEKAVQITQKWVASRLNIELVTNLVMVSMASLPDEMPPQFSINYTPVSAAGTQ
LQIQQLSRLIAIEFTNSGVGPGVEQRAENVVGLSGGDYDSDDEGKELISTVVGGTVGTQK
AQKDSKNQGPVLIPAGVTAKPLKHKIKTVKLSEVTKPMATKGNADMQLMIFKRLLQSDKV
IPVGSVPKQRMRILGALASSLSEEERETLQDYILDDLNRNSELLFLWLYAEYSVAHDFSQ
LNNILYLSKKKEKKSKTSYDEMVVEFMKKLALKPQCKERDEIIQRIFLESPSVPENLISS
LLGMVGQSGDVLVVVNLLKDITLLRPVRRKKAVETLAKLATHDSDAIREQVLTVILELCK
SEKINEEVTASAKSFLNMLLQPNPPESLRSHNLGRQVLPMEWTEPTVKACLFLYLALLPI
NQSIIHDLAQVYVKTVNEAKRTILRLLEGPIRHIGMDSSELLALVETCPKGGETLITRIM
HILTEKAPPSEALVCRVRELYNRRVSDVRFLIPVLTGLSKKEVIAVLPKLIKLNQHVVRE
VFNRLWGVNLDTGTSPLTPVDLLVALHLIDAEKCDVKTVIKATGLCFAERSIYTAEILGI
VLQQLMEQPSLPTLFMRTVIQTLTHYPKLQGFIMNILQRLISKQVWKHKKVWEGFIKCCQ
RTTPQSFTVLLQLPATQLEDVFNTVGELQGMLRNHISTFTDNQRAHISRGIMELIEGPEH
APQVDIEEDMGDDLNNSNQGSNGVSFNTQLVGGFH
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatacagaagtttcaacccgtgacagggttgtggaacttctgaatcaagcaaca
ttactgacctctgaaaaagaaaaaatatcaaacttgtcacaagttcaggagctcattgtt
cataaagaacctcagttgttggattccttttatgaagaggttgcagttttccagacagac
agaaattctgatgtcagaaagtatgttgttggattcattgaagaagcatgtaaaaaggat
aaggagatgctccctcggctaattcctaatctacagctccttatggcagatgaagcaatg
gtagtcgtgaagagagtagtgcaagcctctactcaactgtaccgaatagtgctgtcatgg
ctctctaatactcgtaccatcacacaggagatggagcagacttggcttatcatgactgca
atcaaaacagatattattggaatgattgaccatgacaatgatggggtgcgcacacaagcc
atcaagtttcttgaggctttggttttaatccagacctacacagaagctgactcaatcaag
agagacaatgagtttaatctagaccatgttcctctcactctcaagattgctcgtcccaga
aaacttgaagaggaagccaggatggtgctgggaagactcatcagctttcagggctccata
catatcagctctgtgaatttgatgacctgtatgtcctctctgaccattattgccaaagga
cgaccccaattcatggggaaggtcataaatgcccttaagaagttatatgtcaacttgcca
cccaccttgaccagatctcaagtgaacagcgtgcggaaacacctcaaaattcaactcctt
aatctcctgaagcatacagcagcctacgactaccatgaagatataactacacttctcaat
gacattggagttacagcaacagaggttaacaaatctatgccaagcaaggatgatataaag
aatcgtgtgaagagagaaaggctgactgaagaaagagctgataatcgtgagagacccaag
cgtgagcccccaagtaaaagagctcgtctggaaccagaggtcaaagaagatccaattttc
aacaaacttgagaatgaagaggatgaaaaggcagtgcagatcacacagaaatgggttgcc
agcagactaaacatagaactagttacaaatcttgttatggtttcaatggccagtctacca
gatgagatgccaccccagtttagtatcaactacactccagtatcagctgctggtactcag
ttgcagatacagcagctgtcacgtctcattgctattgaattcacaaattcaggagtcggt
cctggggtggagcagcgagcagagaatgtggttggtttgtctggaggtgactacgacagt
gatgatgaaggcaaggagttaatttccactgtggtgggaggcactgtgggcacccagaaa
gcccagaaagactcaaagaaccaaggaccagtgttgatcccagcaggtgtgacagcaaaa
cccctcaagcacaaaatcaagactgtcaagctgtcagaagtgactaaaccaatggctacc
aaagggaatgcagacatgcagctaatgatatttaaacggttgttgcaaagcgataaggtt
attcctgttggttcagtcccaaaacagagaatgaggattctcggagccttagctagctca
ttatcggaggaagaaagagagacactacaagattatatactagatgacctcaacagaaat
tcagagcttttgttcctttggctctatgctgaatattcagtggcacatgatttctctcag
ttaaacaatatattatatttatcaaaaaagaaggagaaaaagtccaaaacctcgtatgat
gagatggtggtggaatttatgaagaaactagcactgaaaccacagtgcaaggagagggat
gaaattattcagagaattttcttggagtctcctagtgtacctgagaacttgattagttca
ttgttaggcatggtagggcagagtggtgatgttttggttgtagttaacctcctcaaggac
atcactctcctaagacctgtaagaagaaaaaaggccgtggaaactttagccaaattggcc
actcacgattctgatgcaattagagaacaagtcctgacagttattttggaactttgtaag
agtgagaagatcaatgaagaagttacagccagtgccaagtccttcctgaacatgctcctg
caacccaatccgcccgagagtttacgttcccataacttgggtagacaagtacttcctatg
gaatggacagagcctacagttaaggcttgtctctttctgtacctggcattattgcccatc
aaccagtccataatccatgatttagcacaagtgtatgtcaagactgtgaatgaggcaaag
agaaccattttgcgtctattagaaggacccatcagacatatagggatggactcctcagaa
cttctggccttggtggaaacatgccctaagggtggagaaactctcataacaagaattatg
cacatacttacagaaaaagcaccaccaagtgaggctcttgtgtgtcgggtccgggagctg
tacaaccgaagagtgtcagatgttaggtttcttattccagttcttactggtctaagcaaa
aaggaagttattgcagttttgcctaaactgatcaagttgaatcagcatgttgtgcgagag
gtattcaatcgtttgtggggtgtgaacctagacactggtacttcccctctcacaccagta
gaccttctagttgcccttcacctcattgatgctgagaagtgtgatgtcaaaactgtcatt
aaagcaactggtctatgttttgctgagcgaagtatatacacagcagaaatattgggcatt
gtcctgcagcagttgatggagcagcctagtcttccgacactcttcatgcgtacagttatc
cagactttgacacactatccaaaacttcagggtttcatcatgaatatcttacagcgactt
atttctaaacaggtttggaaacacaaaaaggtgtgggaaggtttcatcaagtgctgtcaa
aggacaacaccccagagctttactgtgttgctccagctgcccgcaacacagttagaagat
gtcttcaacactgttggagaattgcaggggatgctacgtaatcacatcagtacctttaca
gataaccaaagagcccacatctcccggggcataatggagttgattgagggaccagaacat
gcaccccaagtggacattgaagaagacatgggggatgatctgaataactcaaatcaaggc
agcaatggagtttccttcaacacacaactcgtgggtgggtttcactga
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