Oratosquilla oratoria (Japanese mantis shrimp): 143038428
Help
Entry
143038428 CDS
T11268
Symbol
U2af50
Name
(RefSeq) U2 small nuclear riboprotein auxiliary factor 50 isoform X1
KO
K12837
splicing factor U2AF 65 kDa subunit
Organism
oot Oratosquilla oratoria (Japanese mantis shrimp)
Pathway
oot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143038428 (U2af50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oot03041
]
143038428 (U2af50)
Spliceosome [BR:
oot03041
]
Complex A
U2 snRNP components
U2 related factors
143038428 (U2af50)
Complex B
143038428 (U2af50)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_MUD2_C
DUF8489
RRM_7
DUF8400
Transformer
CDC45
RRM_9
Motif
Other DBs
NCBI-GeneID:
143038428
NCBI-ProteinID:
XP_076063720
LinkDB
All DBs
Position
24:8877338..8886343
Genome browser
AA seq
503 aa
AA seq
DB search
MTISAIDGRKSSERLDVILHIEREEKKDKDKDRDKDKDKDRDRDRERDRKRRSRSRSRER
RRRRSRSRSRGGRSRSRSRSRDRSRKQRRKKPSLYWDKPPPGFEHITPLQYKAMQAAGQI
PSHVMPIASQVPAAAAAATTQITSALVPEVSQVPPVPQAVPVPVVGSTITRQARRLYVGN
IPFGVTEEEMMEFFNQQMHLAGLAQAAGNPVLACQVNLDKNFAFLEFRSIDETTQAIAFD
GINFKGQSLKIRRPHDYQPMPGMSEHPTLTMPGTSDYPSLPVIAGVVSTVVPDSPHKIFI
GGLPNYLNEDQVKELLMSFGQLRAFNLVKDSATGLSKGYAFCEYVDVSITDQAIQGLNGM
QLGDKKLIVQRASVGAKNANAMAQAPVQIQVPGLQLQGGTGPATEVLCLMNMVTPEELKD
DEEYEDIVEDIKEECNRYGIVRSIEIPRPVEGVEVPGVGKVFVEFNSVLDCQKAQQNLTG
RKFANRVVVTSYFDPDRYHRRDF
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgacgatttcggcaattgatggaaggaagagtagtgaaaggttggatgtaattcttcac
atagaaagagaagaaaagaaagacaaggacaaggatcgtgataaagataaggataaagat
agggacagagacagagaaagggacagaaagcgacggagtagatcacgatcaagggaacgg
cgtagaagaagatccaggtcaagatcaagaggaggacggtcaagatcaaggtctcgttca
cgggatcggtcacgaaagcaacgaaggaagaagccttccctgtattgggataaaccccca
ccgggttttgaacacattacaccactacaatataaggctatgcaagctgctggtcagatt
ccatcacatgttatgccgatagcatcacaagttccagctgccgctgctgcagcaactaca
cagatcacttcggctctggtacctgaagtttctcaagtacctccagtacctcaagcagtg
ccagtccctgtggttggctcgactattactagacaggctcgacgattgtacgttggtaat
ataccctttggtgtaacagaggaagagatgatggaattctttaatcaacaaatgcaccta
gcaggacttgcacaagcagcaggcaatccagtgttagcctgtcaggtaaacctggataaa
aattttgccttcctggagttccgttctattgacgaaactacacaggcaatagcctttgat
ggcattaattttaaaggacaaagcctgaagatcaggcggcctcatgattatcaaccaatg
ccagggatgtccgagcacccaacacttaccatgccaggtacgtcggactacccatcacta
cctgttattgcaggagtagtctccactgtggtaccagattcaccacacaagatcttcatt
ggcggtttaccaaattacttaaatgaagatcaggtgaaggagctcctgatgtcgtttggt
caactgcgagcattcaatttggtgaaggactcggccacgggactctccaaaggttatgct
ttctgtgaatatgtggacgtgtccattacagaccaggcaattcaagggttaaatggcatg
cagttaggtgacaagaagctcattgtacaacgggctagtgttggtgccaagaacgctaat
gccatggctcaagcacctgtgcagatccaggtaccaggtctgcagctacagggaggtaca
ggacctgcaacggaggtcttgtgtctaatgaacatggttacacctgaggagctcaaagat
gatgaagaatatgaagatattgtcgaagatattaaggaagagtgtaacagatatggaatt
gttcggtcaattgaaattccacgtcctgtcgagggagtagaggttcctggagtagggaag
gtgtttgtagagttcaattctgtattggattgtcaaaaagcgcagcagaatcttacagga
agaaaatttgccaaccgtgttgttgttacctcttactttgatccagatagatatcacagg
agagatttttaa
DBGET
integrated database retrieval system
