Oratosquilla oratoria (Japanese mantis shrimp): 143040412
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Entry
143040412 CDS
T11268
Symbol
Polr2B
Name
(RefSeq) RNA polymerase II subunit RpII140
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
oot Oratosquilla oratoria (Japanese mantis shrimp)
Pathway
oot03020
RNA polymerase
oot03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oot00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
143040412 (Polr2B)
09124 Replication and repair
03420 Nucleotide excision repair
143040412 (Polr2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oot03021
]
143040412 (Polr2B)
03400 DNA repair and recombination proteins [BR:
oot03400
]
143040412 (Polr2B)
Enzymes [BR:
oot01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
143040412 (Polr2B)
Transcription machinery [BR:
oot03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
143040412 (Polr2B)
DNA repair and recombination proteins [BR:
oot03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
143040412 (Polr2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
ATPTG10
DUF5817
Motif
Other DBs
NCBI-GeneID:
143040412
NCBI-ProteinID:
XP_076067584
LinkDB
All DBs
Position
28:49755796..49779044
Genome browser
AA seq
1179 aa
AA seq
DB search
MLPYGDIDEDIGYGDDEADEISPDLWQEACWLVISSYFDEKGLVRQQLDSFDEFITMTIQ
RIVEDSQAIDLQAEAQHNSGELETPPRHLLKFEQIYLSKPTNWEKDGYNYSMMPNEARLR
NLTYSSPLYVDIVKTIIKDGEDTTETKDEKIYIGKIPIMLRSTYCLLSGLTDRDLHEVNE
CPLDPGGYFVINGSEKVLIAQEKMASNTVYVFSVKDGKFAYKCEIRSCMEHSARPVSTLW
VNMMARGGSSAKKSAIGQRIIGILPYIKQEIPVMIVFRALGFVADRDILEHIIYDFDDPE
MMEMVKPSLDEAFVIQEQTVALNFIGGRGARPGVTKEKRIKYAREILQKEMLPHVGVSDF
CETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMAFLFRGLFRNLMKEVR
MHAQKLLDKGQDYGLDAAVKPKLITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFA
STLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGS
QPAPIMEFLEEWSMENLEEIAPSSIHDATKIFVNGCWVGIHRDPEQLMVTLRKLRRQMDI
IVSEVCMVRDIRDKEIRIYTDAGRICRPLLVVESCKLLLKKRHIDLLKEREYNNFSWQDL
VASGVVEYVDCAEEETIMIAMSLEDLCEEYDKTYCNTYTHCEIHPAMILGVCASIIPFPD
HNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLFYPQKPLVTTRSMEYLRFRELPAG
INSIVGIACYTGYNQEDSVIMNLSTVERGFFRSCFYRSYKDSESRRQGLQDEVFEKPSRE
TCQGMRHAIYDKLDDDGIISPGMRVSGDDVIIGKTITLPENEDELEGQTRRFSKRDASVF
LRGSETGIVDQVMLTVNIDGDRFTKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRMEDMP
FTVEGITPDIIINPHAIPSRMTIGHLIECLQGKLGANKGEIGDATPFNDAVNVQKISHLL
QEYGYHLRGNEVMYCGHTGRKMNAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPM
EGRAREGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYAVHVCNLCGLMCIANLRNNTF
ECKGCRNKTKISQVRMPYACKLLFQELMSMNIAPRMMVK
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgttaccatatggagacattgatgaagatattggatatggagatgatgaagctgatgaa
atctctcccgacttgtggcaggaagcctgttggcttgttatctcgtcgtacttcgatgag
aaaggccttgtgcgtcagcaactcgattcctttgacgagttcatcacaatgacaattcaa
agaattgttgaagattcacaggccatagacttacaggcagaagcacaacacaattcagga
gaactagaaaccccacccagacatctgctcaagtttgagcagatttatttaagtaagcct
acaaactgggaaaaggatggctacaactacagtatgatgcccaatgaagctcgattgcgc
aatctcacgtactcatcccccctttatgtagatattgtcaaaacgattattaaggatggt
gaggacaccactgagaccaaagatgagaagatttatattggtaaaattccaattatgctg
aggtccacctattgccttctcagtggtttgacggacagagatctgcacgaagtcaacgaa
tgccctcttgatccaggaggttattttgtgatcaacggatctgaaaaggtgctcattgct
caggagaagatggcatccaatacagtgtatgtattcagtgtaaaggatggcaagtttgct
tacaaatgtgaaatccgatcttgcatggaacattctgctcgacctgtatcaacactttgg
gttaacatgatggccagaggaggcagtagtgctaaaaagtctgccattggacagcgtata
attggtattctgccgtacatcaaacaagaaatcccagttatgattgtcttccgtgctctt
ggatttgtggctgacagagacattttagaacacatcatttatgattttgatgatccagag
atgatggaaatggtaaaaccttcattggacgaagcctttgttatccaagaacaaacagtt
gccttgaacttcattggaggtcgaggtgcacggcctggtgtcaccaaagagaaacgtatc
aaatacgcaagagaaatcttgcaaaaagaaatgttgccacatgtgggagtatcagacttc
tgtgaaaccaaaaaagcgtacttcttgggctacatggtgcaccgtctcctgcttgctgct
cttggtcgacgtgagttggacgatcgtgatcactatggtaacaagagactagatcttgct
gggccacttatggcgttcctcttcagagggttattccgtaacttgatgaaggaggtacgg
atgcatgcccagaagcttttggacaagggacaagactatggtttagatgcagctgtcaaa
cctaaactgattactgatggattaagatactctttagccactgggaactggggcgaccag
aaaaaagctcatcaggctcgagctggggtgtctcaggtgttgaatcgacttacttttgcc
tctacgttatcacatcttcggcgagtcaattctcccattggaagggatggtaaacttgct
aagccaaggcagcttcataacaccctatggggaatgatctgccctgccgagactcctgaa
ggtgctgctgtaggtttggtgaagaatctagctcttatggcttatatctctgttgggtca
caacctgcaccaatcatggagttcttggaagaatggtcaatggaaaatcttgaagaaatt
gctccatcatccattcacgatgctacaaaaatcttcgttaatggttgctgggtaggtatc
catcgagatccagaacagttgatggtcacactgaggaagttgcgtcgtcagatggatatc
atcgtgtctgaggtgtgtatggtgcgagatattcgtgataaagaaatccgaatctacact
gatgcaggaagaatctgtaggccccttcttgtggtagaaagttgcaaactcttgttaaag
aaaagacacattgatctgctgaaggagagggagtataataacttcagctggcaagatctt
gtcgcgagtggtgtagtggaatatgtcgactgtgctgaagaggagactatcatgattgcc
atgtcacttgaagatctgtgcgaggaatatgacaagacgtattgtaacacgtatacacat
tgtgagattcacccagccatgattcttggagtctgtgcatccattattccattccctgat
cacaaccagtctcctcgtaacacttatcaaagtgctatgggtaagcaagctatgggtgtt
tacattactaactaccatgttcggatggacacccttgcgcacgtacttttctatccacaa
aagccccttgtcacaacacggtctatggaatatcttcgcttcagagaacttcctgcaggt
atcaattccattgtgggtattgcttgctacacaggatacaaccaggaggattctgttatt
atgaacttgtcaactgtagagagaggattcttccgatcctgtttctaccggtcctacaaa
gattcagaaagtagaagacaaggacttcaagatgaggtgtttgaaaagccatcacgagaa
acgtgtcaaggcatgcgtcatgctatatacgacaaattagatgatgatggtattatatct
ccgggaatgcgtgtgtctggtgatgatgtaattattggcaagactatcacgctgccggag
aacgaggacgaactggaaggtcagacgagaaggttcagcaagagggatgccagtgtgttc
ctcagaggttcagaaactggtattgttgaccaggtcatgttgacagttaacatagatgga
gaccgctttaccaagattcgtgtgaggtcagttcgtattcctcaaattggagacaagttt
gcttctcgtcatgggcagaaaggaacttgtggtatccagtacaggatggaggacatgccg
ttcacagttgaaggcatcacaccagacatcatcattaatcctcatgccattccgtctcgt
atgacaattggtcacttgattgagtgccttcaaggtaagcttggagcaaacaaaggggag
attggcgatgccacacccttcaacgatgctgtgaatgtacagaagatttctcaccttctc
caggagtatggctatcacctacgaggaaatgaggttatgtactgtggtcatacaggccgt
aagatgaatgcccagattttcttgggaccaacctattatcagcgcctcaagcatatggtg
gatgacaaaatccattcaagggctcgaggcccagtccagattcttgtaaggcagcctatg
gaaggtcgagcaagagaaggaggtctccgttttggtgagatggagcgggattgccaaata
gctcatggtgcagcacagtttctaagggaacgcctgttcgaagtcagtgatccctatgct
gtccatgtctgcaacttgtgtggtctcatgtgtattgctaacttacgaaacaatacattt
gagtgcaagggctgtaggaacaagactaagatatcacaggttcgcatgccctatgcttgc
aaactgctcttccaagagcttatgtcaatgaacatagctcctcgcatgatggtcaagtaa
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