Oratosquilla oratoria (Japanese mantis shrimp): 143040979
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Entry
143040979 CDS
T11268
Symbol
Xpd
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit Xpd
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
oot Oratosquilla oratoria (Japanese mantis shrimp)
Pathway
oot03022
Basal transcription factors
oot03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oot00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
143040979 (Xpd)
09124 Replication and repair
03420 Nucleotide excision repair
143040979 (Xpd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oot03021
]
143040979 (Xpd)
03036 Chromosome and associated proteins [BR:
oot03036
]
143040979 (Xpd)
03400 DNA repair and recombination proteins [BR:
oot03400
]
143040979 (Xpd)
Enzymes [BR:
oot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
143040979 (Xpd)
Transcription machinery [BR:
oot03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
143040979 (Xpd)
Chromosome and associated proteins [BR:
oot03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
143040979 (Xpd)
DNA repair and recombination proteins [BR:
oot03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
143040979 (Xpd)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
DEAD
ResIII
SNF2-rel_dom
nSTAND3
AAA_11
Peptidase_M6
Motif
Other DBs
NCBI-GeneID:
143040979
NCBI-ProteinID:
XP_076068552
LinkDB
All DBs
Position
30:complement(3114466..3160366)
Genome browser
AA seq
757 aa
AA seq
DB search
MLLDVDGLKVYFPYDFIYPEQYSYMLDLKRGLDAKGHCLLEMPSGTGKTISLLSLIVAYL
HHNPQNLSKLIYCSRTIPEIEKVIEELRKLKEYIEKESGETANITGLALASRKNLCIHPE
VNKARDGKIVDSGCQALTASYIRARAQRDDTVQQCDFFEKFDLHGKEFPLPNGVYNLDDL
RVFGTQKGWCPYFLARHAVMTANIVVYSYHYLLDPKIAEIVSKEMKGESCVVFDEAHNID
NICVDSMSIKINRRILDKAKTSITNLQEHVQGLKVSDSARLQEEYRRLVAGLRDAAMRTD
LVANPVLPQDVIEENVPGNIRTADHFISFLRRLLDYLKMRLTASHAIQESPAGFLRDIRA
KAFIDRKPLRFCSERLASIIRTLELTDIADLSPVVAVANFATLVSTYTLGFTIIIEPYED
KAPNVPNPILYLRCLDSSIAIKPVFTKFQSVIITSGTLSPLDMYPKILDFHPVIQNSFTM
TLARPCLLPMVVTKGNDQVAMSSKFESRDDPAVVRNYGKLLVEMTTTVPDGMVCFFTSYL
YLESVVATWYDHGIISDLQRNKLVFIETQDDAETSLALLNYMKACDKGRGAILLAVARGK
VSEGIDFDHHYGRCVIMMGIPFVYTQSRILKARLEYLRDQFNIRENDFLTFDAMRHAAQC
VGRVIRGKTDYGIMIFADKRFSRADKRNKLPRWIQEHLVDHKCNLSTEEAIQLTRPWLRQ
MAQPFTREDQLGVSLLTLEQLNSAENIEKIQKRAKHT
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgctgctggatgttgatggtctgaaggtgtacttcccatatgacttcatttaccctgaa
caatactcttatatgctggacctcaaaagaggtctggatgcaaagggacattgtctcctt
gaaatgccatcaggaacagggaaaaccatttcccttctttctcttattgttgcgtacctt
caccacaaccctcagaacttgtctaaattgatttactgctcaagaaccatacctgaaata
gaaaaggtaattgaagaattaagaaaattaaaggaatatatagagaaggaatctggtgaa
acggcaaatatcacagggttggctcttgcatcaagaaaaaatttgtgtattcatccagag
gtgaacaaggcacgtgatggcaagatagttgatagtggatgccaagctctgacagcatct
tacatccgtgccagagcgcagagggatgacactgttcaacagtgcgacttttttgaaaaa
tttgatctccatggcaaagagtttccccttcctaatggtgtttataacttagacgatctt
agagtatttggcacacagaaaggatggtgtccctattttttggcaaggcatgctgtgatg
acagccaacattgtggtatacagttaccattaccttcttgaccccaaaattgctgagatt
gtgtcaaaagaaatgaaaggagagtcttgtgtagtctttgatgaagcacataatattgat
aatatttgtgtggactcgatgagtatcaaaatcaacagaagaatcttggataaggcgaaa
acaagcataacaaatcttcaggagcatgttcaagggttgaaagtgtcagacagtgcaaga
ctacaggaggagtacagacgactagttgctggtcttcgagatgctgcaatgcgtacagac
cttgttgctaacccagttctcccacaagatgtcattgaagaaaatgtacctggaaatatc
cgcacagctgatcatttcatatcattcctacgccgtttattagactacctcaagatgaga
ttgacagcttcacatgctattcaagagtcaccagctgggttcctcagggatatccgagcc
aaagcatttatcgatcgaaagcctcttagattctgtagtgaacgattggcctccattatc
agaacactagagctgactgacattgcagatctaagtccagttgttgctgttgctaacttt
gcaaccttggtgtcaacatatactttaggttttacgatcatcattgaaccatatgaagac
aaagcaccaaatgtacccaatccaatcctgtacttaagatgtcttgactcctccattgcc
atcaaaccagtctttacaaagtttcaatctgtgataataacatcaggaacgttgtcgcct
ctggatatgtacccaaaaattctagattttcaccctgttattcaaaattcatttaccatg
acattggctcgaccctgccttcttccaatggttgtaaccaaaggtaatgatcaagtggca
atgtcatcaaagtttgagtccagagatgaccctgctgtcgttagaaattatggcaaactt
ttagtagaaatgactacaacagtacctgatggtatggtatgcttcttcacttcctatttg
tatttggaatctgtagtggcaacctggtatgaccatggcattattagtgacctgcagcgc
aacaaacttgtttttattgagactcaggatgatgcagaaacatccctggctttgctgaat
tatatgaaggcatgtgataaaggacgaggtgcaatactacttgcagttgcccgagggaaa
gtgtcagaaggaattgattttgaccaccattatgggcgttgtgttatcatgatgggaatc
ccatttgtttacacacaaagtagaattcttaaagcaagattggaataccttagggatcag
ttcaatataagagaaaatgatttcctgacatttgatgcaatgaggcatgctgctcagtgt
gtaggtcgagtcataagaggtaagacagattatggtatcatgatttttgcggacaagaga
ttttctcgtgccgataaaagaaataaattgccaagatggattcaggagcatctggttgat
cacaagtgtaacctttcaacagaggaagcaatacagttgacacggccatggctacgtcag
atggctcaacccttcacacgcgaggaccagcttggagtatcattacttactcttgagcaa
cttaactctgcagaaaacattgaaaagatccaaaagagggcaaaacatacctaa
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integrated database retrieval system
