KEGG   Ogataea parapolymorpha: HPODL_00143
Entry
HPODL_00143       CDS       T08137                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
opa  Ogataea parapolymorpha
Pathway
opa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:opa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    HPODL_00143
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:opa03041]
    HPODL_00143
Spliceosome [BR:opa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    HPODL_00143
SSDB
Motif
Pfam: WD40_Prp19 WD40 WDR55 WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_EML ANAPC4_WD40 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 PRP4 Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st Beta-prop_Vps41 NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_IFT122_1st WD40_RFWD3 Beta-prop_SPT8 WD40_like Beta-prop_SCAP WDR90_beta-prop_4th KNTC1_N Beta-prop_DCAF4 WDR54 PROPPIN Methyltransf_24
Other DBs
NCBI-GeneID: 25769618
NCBI-ProteinID: XP_013937067
UniProt: W1QLE3
LinkDB
Position
I:280472..281758
AA seq 428 aa
MSELEFKDVLKQVPTIDEDVRRVLQALGEPQTYFGEDKADRRERLVDLLARDEGLRARFA
DMTGLDRGDGSDADEDEEFYTPGGEELYQARVFLANYSLARARDRIKSQTEYYQNHRPVE
VLQERRKYNESLKHIAAQGSQVVSDRCTSVLRYSNDQRYLACGSWDGKTYLMNQQLERLA
VLDGHEEKVGGIDWHPHVTSVVATSGSEGLVLLHNADTQAVVATLKGHEHRVARIQFHPS
GRFLASSSFDLTWRFWDVETNKELYYQEGHSKEVFTLAHQPDGSLLASGGLDGIGHIWDL
RTGKSIMVMEDHVKGIYAMDWRKNGFELLTGGGDANLKVWDIRNNRKPKQNIVAHKKLIS
DIKVSGNDKFMVTTSYDGNLNILSCDNWLVIKQFKAPEKLMCCDIAPDDQTIVSGGWDRC
VNLYNSSL
NT seq 1287 nt   +upstreamnt  +downstreamnt
atgagcgagcttgagttcaaggacgtgctcaaacaggtcccgacgatcgacgaagatgtg
cggcgcgtgctgcaggccctgggcgagccccagacctactttggcgaggacaaggcagat
cggcgcgaacgactggtcgatttgctcgccagagacgaaggcctccgtgctcgctttgca
gacatgacggggctggaccgcggggacggttcagatgccgacgaagatgaagaattctac
acgccagggggcgaggagttgtatcaggcccgtgtttttctggccaactattcgcttgca
agggctcgtgacagaatcaagtctcaaaccgaatattatcagaatcatcgacccgtggag
gtgctgcaggagcgtcgcaagtacaacgaatcgctgaagcacattgctgcccagggctcg
caggtggtttctgatcgctgcacgtctgtgttgcgctactccaacgaccagagatacctg
gcctgtggctcgtgggacggcaagacgtacttgatgaatcagcagctggaaaggctggcc
gttttggacggacacgaggagaaagtgggtgggatagattggcacccccacgtaaccagt
gtggtagccaccagtggaagcgaagggctggtcctgttgcacaacgccgatacacaagcc
gtggtagccactctcaaagggcacgagcatagagtggcccgaatacaattccatccctcg
ggccggtttctggcgtcttcatcgttcgacctaacgtggaggttctgggatgtcgagaca
aataaagagctatactaccaggaaggccattcgaaagaagtgtttaccttggcgcaccag
ccagacgggtctcttcttgccagtggcggtttggacgggattggccatatatgggacctg
cggacaggaaagtcgatcatggtgatggaggaccacgttaaggggatatatgctatggac
tggaggaaaaacggatttgagcttctcacgggcggtggagacgccaatctgaaagtgtgg
gacattagaaacaaccgcaaaccgaagcagaatattgtggcgcacaaaaagctgatttct
gacataaaagtgtctggtaacgacaagttcatggtgaccacgtcttacgacggcaaccta
aatattctttcctgcgacaactggcttgtgatcaaacagttcaaggcgccagaaaagctt
atgtgctgtgacattgctcctgatgaccagacgattgtatctggcggctgggatcggtgc
gtcaatttgtataatagcagcttatag

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