Ogataea parapolymorpha: HPODL_00257
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Entry
HPODL_00257 CDS
T08137
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
opa
Ogataea parapolymorpha
Pathway
opa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPODL_00257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opa03019
]
HPODL_00257
Messenger RNA biogenesis [BR:
opa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
HPODL_00257
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
HPODL_00257
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EXOSC1
RRP4_S1
CSL4_N
RRP40_S1
S1
Motif
Other DBs
NCBI-GeneID:
25769731
NCBI-ProteinID:
XP_013935676
UniProt:
W1QFJ0
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All DBs
Position
III:complement(168065..168691)
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AA seq
208 aa
AA seq
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MNALVLPGQPIVPVHTTNHTYVSGSNTLQIERTVDGTVVPCIVATTLGSVHFTTNDNTST
VSVQSSGAKIANFTPSENDVVIAKVTKISSNKVHLDILHVQDASIHLSNLLLNDYGENFK
AVIRSSDIRSTDRDKVKVGECFRPGDIVKALVISLGDGINYYLSTARNDLGVIHARSKSG
KLLYPLDWETMVVPETGELEPRKCANIN
NT seq
627 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccttggtattgccaggacagccaattgtccccgtccatacgaccaaccacacc
tatgtgtcaggctccaacacgctgcagatagagagaacagttgatggaacggttgttcca
tgcattgtcgctaccactttgggctctgtgcactttaccaccaacgataacacgtccacc
gtttcagtgcaatcgagtggagctaaaatcgccaatttcacgccttctgaaaacgacgtg
gtcattgccaaagttacaaagatatcgtccaacaaagtccacctcgatatcctacacgtt
caagacgcaagcattcatttatctaatttattgctaaacgattacggcgagaatttcaaa
gccgtgattcgctcctcagacatccgctccacagacagagacaaagtgaaagtcggagag
tgttttagaccaggagatatcgtcaaggcgctggtgatttctctgggagacggaataaat
tactacctgtccacagcaagaaacgatttaggagtgatacacgcgcgttcgaaatcgggc
aagctactctacccgctagactgggaaacgatggtggtgcccgaaacaggcgaactggaa
ccgcgcaagtgcgccaacattaattag
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