Ogataea parapolymorpha: HPODL_00356
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Entry
HPODL_00356 CDS
T08137
Name
(RefSeq) U3 small nucleolar RNA-associated protein 20
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
opa
Ogataea parapolymorpha
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
opa03009
]
HPODL_00356
Ribosome biogenesis [BR:
opa03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
HPODL_00356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
FANCI_S2
Motif
Other DBs
NCBI-GeneID:
25769828
NCBI-ProteinID:
XP_013935777
UniProt:
W1QFS5
LinkDB
All DBs
Position
III:340370..347464
Genome browser
AA seq
2364 aa
AA seq
DB search
MVKKKGTDSGRRFAFTSFKDRVDAIQIDPILQLNRKAFHEAEISHFLSTLEHWREVNLSK
SFTELVEVLEPLCLSLPQLIYHQKTIFESLKNTLLLNDRLSLQPTLELLTQFCHDLGTDF
MPYYSDTLGTLVEIVPQQTETDPLEWIFNALAYLFKYLSKELSKDLVPTFRLLQPLLIIE
KKEYIARFASQAMSFLVRKATSKALTSFVKTVMNEDLDVNVYHKSLVVIFSESMKNSQGS
LHSKGPSILSVLTEICEPDEATTAIFSDVLLDLLSHVSEASAIYETILEKMTYQTSGSVW
ILTTLAFAESGKKVPNWGALFDGVLKLVQDEGLIQLFATLIRNADQLELSKRYVYLFTTM
AAKDSLFLPFVETSLELSQDRALSFGKNYVTSFISQNWRQRHKEIAYFLDRMNKKGVALE
VVIPHEFNEFIKSDIQNGLYWRLLMLQYSKATIDSETLLQKLPKASADEQGLILKVLAKS
DIPDISSAVIECISASATNIVFLEGLQEVIKKNPASFRKQQHTLIELLKDNLVLPSHSVR
ETTLSIIMLLFETAPEIISTCRLIEQIPLDLQTGREIQLRYRSFVQTFMDSPKDQLLETV
VVKFLFGQLSNKFSPSWSGVLEFMEQVIDRIEPLVWAEIETFLKKDYPPKEADTEQMHGV
SQWTGLNPKLVGYVEKCESIAVHYSAIDKSLVPPAHESTEFTAFYREQCIKVLHRLPKLA
EQHFDVLLPYVLEDEEDNVKWPVKDRNSVVEVMAKFQNLRRVPGADQVHKFLLRLLANRS
VQTQKLAFNALANWKNPVYNRYRDNLNSLLDDMLFRDEVINLLQNEEKTIIREQDTDTIM
PLILRILFGRAQTLRTSGTKQGRRTAAIKALSNLSDQHMKDFLSLSFEKLNEMRSHELSF
RLIRTASGFLNMVSDLLSSIGRTRSECLSILPDPLVFSLSVSEKAIGSADDITDKAARNN
RQLGFKVLYDVTDYLGDSFDWKPYGNDIYYNLVHQKMANFADENLQQPSSLMRLMTALWP
QPNLQFFLRYEEMAPVKALMGVLKHEKAKEAVQRAVLQFVLKLLNSNDSSDQQVEVLILI
ISEYLNSLVALFANSESKEVNGLCVKILHNLVQRDLITASESSKFLVDSLVMVLDKPAAQ
IDMATRTEIVSVLGLVARNLSCSVTEIMPLYKSMAPLLKIHEEREMRIAICQVYLALGAK
YSELERVSQVVAALNSYSDKRIREPDYEQRLECYRKIDRELYDSFSGSEWLPVINTALFH
INDETDSAMRSSASNTLCRFIDVSESFAEILHEIVLPVVRPGLRRKNELVRQEYINVVAH
VVEKTAEFPDMKVLLHGGDDEANFFKNIMHPQVHRRQRAVRRLGETAQELADSSIAHYLL
PMIERFAFWDDEKYRNLANDTVATVAKLAAYVSWNQYRAILSRYVATMTGALQKEKHEEL
RDSVQVVTAVASSMRELQRRGAKDFPAPEKLDDIVVEMLIPPVKKVLTKRDEETVVQRVA
LSEALVSLVMCCSAARIETELPGILTSICQILRARSEELRDAVRKHLGRIAVGLGSPYLK
FIMQELKTALTRGPQIHILSFTIHYLLVVMDGVLSQGDLDECAGYVIDTVMNDIFGAASE
EKEAEGYNKKMKEIKHNKSYDTGELLASKMLLQNFQQILGPIKMLLREKLAFRTQKRLDE
LLRRVSIGLQKNKEAGSTSAILLCHEIYGQSLEKDETRTKRVSETEDHFLVKLDAKPLRT
QMEYSLYSKVLQKFAFDLLHAVISKHPQLFTAGNLADFVPLLETSLSSGDEGVVLAALKM
LTQLSRLDFAEDVNAQFTACARATLKIVKDLPSTNSDLCQSALKFLSAVIRNKDGLQLKD
TALSYLLKKIEPDLDEPMRQGVAFGFVKALIAKHVMLPEIYDVLESVSRIMITSTSGEIR
QTARSVYYTFLMEYDQSRGRLEKQFKMLLGNLEYPAQSGRQSVMELLHLIVRKAGKDVLA
VVSASFFIALANVSVTDEAPSCREMASEVLLAMLGRMDDLAFVEKCVAAWIDNRKNELLV
RCGLHVYKLYVDAVGLDNAGLNETALAKINHVLAASAKSSEAGMSWELVYSSLVVFEALS
EKTDVYNDKYAPTWAAVVDCLLYPHSWIRLASARLVGQYVQKCATVSDHTLQTIAYRSFR
QLSAPGVAQSLATEVAKNLVYVSKIWAQKDTRYVPADGEQMEQSALEWALARACAVLRNE
SAPPKDLLVTKKAMVQYCVFLVSFLDAETVGHVIQQPLDPLVVISEQEPAVEDTDENTLP
AMALKCLELVAQKIGVSEYNLLYSATKKAISERRQERKTKRAQLSLNNPAAAAKRKLKKH
ARTREKRKHLKDENGLYRPKRKKL
NT seq
7095 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagaagaagggcacagactcggggcgtagattcgccttcacctccttcaaggac
cgagtcgatgctatacagatagatcctattttacagctaaacaggaaagctttccatgag
gcagaaatatcccacttcctgtccacattagagcactggagagaagtgaatttatccaaa
tcgttcaccgagctggttgaagtgctggagcccttgtgtttaagtttgcctcagctaatc
tatcaccaaaagactatttttgagagtctcaaaaacacccttctgcttaatgatagactg
tcgttgcaaccaacactagagcttctgacccaattttgccatgatctgggaacagatttc
atgccgtattattccgatacactgggaacgcttgttgagattgttccacaacaaacagag
accgatccgctggaatggattttcaatgcccttgcatatttattcaaatacctgtccaaa
gagctgtccaaggaccttgttcccacctttagactgcttcaaccgctcctgattatagag
aaaaaagaatacatcgctcgattcgcttcgcaggccatgtcgttcctggtccggaaggca
acgtccaaagctctaacttcatttgtcaagacggtgatgaatgaggatttggatgtgaat
gtttaccacaagtctctcgtggttattttctccgagtcgatgaaaaactcgcaaggatcc
cttcactcgaaagggccgtcgattctcagcgtgctgacagagatttgtgagccagacgaa
gcgacgacggcaattttttcggacgttttactggacctgctttcacacgtctcggaggcc
tctgcgatctatgagacaattctggaaaaaatgacataccaaacctcgggcagcgtgtgg
attctcacgactcttgcgtttgcagagagcggtaaaaaagtgcccaattggggtgctctc
ttcgacggtgttttgaagcttgtccaggatgaaggacttattcaattgttcgccacgttg
ataagaaacgccgaccagctggagctttccaaacgctatgtttatcttttcaccaccatg
gcagcaaaagactcgcttttcctgccctttgtcgagacatccttggagctttctcaagat
agagcgttaagttttggcaagaactatgtcacgagcttcatttctcagaactggagacag
agacataaggaaatagcctattttttggatagaatgaacaagaaaggagtcgctctcgag
gtggtgattccgcacgaatttaacgaattcatcaagtccgacattcaaaatggtttatat
tggagactgctgatgcttcaatacagcaaggctacaattgacagcgagacgctgcttcag
aagcttcccaaagcatctgcagacgagcaggggctgattctcaaagttctcgcaaaatcc
gacattccagacatctcgtctgcggttatcgagtgcatttcagcttcagctaccaatatt
gtttttttggaaggactgcaagaggttattaagaaaaatccagcttctttcagaaaacag
cagcatacgctcatagaactactgaaggacaatctggtgctaccatcacattctgttcgc
gaaacaacgctctccattattatgcttcttttcgaaaccgctcccgaaataattagcacc
tgtcgactgatcgaacaaattccgcttgatctgcagacaggtagggaaatccagcttcgt
tacagatcgtttgtgcaaacgtttatggactcgccaaaagaccagctgctggagacagta
gttgtcaagttccttttcggacagctctcgaataaattctcgccgtcctggagcggagtg
ctagagttcatggaacaggttattgatcgcattgagccactggtgtgggccgagattgag
acgttcctgaaaaaagattatccaccaaaagaagccgacacagagcaaatgcacggtgtt
tcgcaatggactggtctcaaccccaaactggttggatatgtggagaagtgtgagtcgatt
gcagttcactattctgccattgacaagagtcttgttcctccagcacacgaaagcacagag
ttcacggccttttatcgcgaacagtgtatcaaggtactgcacagactgccaaagctggct
gagcagcattttgacgtgctcttgccatacgtccttgaggatgaagaggacaacgttaaa
tggccggtcaaggacagaaactccgtggtggaggtgatggccaaattccagaacctgcgc
agggtgcctggtgccgaccaggtgcacaaatttctgctgcggctgttggccaacagatcc
gtccagacgcagaaacttgcttttaatgccctggcaaattggaaaaacccggtctacaat
aggtacagagacaacttgaacagtttactggacgatatgcttttcagagacgaggttatc
aatttgctccagaacgaagaaaaaacaattattcgggagcaggacacagataccattatg
ccgttgatattgcggattttgtttggtcgcgcacaaactttgaggacaagcggcacgaaa
cagggccgtcgaacagctgccatcaaggctctgtcgaatctgagcgaccagcacatgaaa
gattttctatctctgtcgtttgagaagctgaacgagatgcggtcgcacgagctgagtttc
cggttgatcagaacggccagcggatttttgaacatggtctctgacctgctgtcatcgatc
ggccgtacccgcagcgagtgtctgtcgattctgcctgaccctctagttttctcgctcagt
gtgtcggaaaaagccattggttctgccgacgatattaccgacaaagccgccagaaataac
aggcagctcggtttcaaagtgctttacgacgtgacagactatctgggcgactcgtttgac
tggaagccgtacggaaatgacatctactacaatctggtgcaccagaaaatggccaacttc
gcagacgagaatttgcagcagccgtcgtcgctgatgcggctcatgacggcgctgtggccg
caaccaaacctgcaatttttcctccgctacgaggagatggcgccggtgaaggcactgatg
ggcgtacttaagcacgaaaaggcgaaggaggccgtgcagagggccgtgctgcaatttgtg
ctgaaactgctcaacagcaacgacagcagcgaccagcaagtcgaggtgctgattttgatc
atctctgagtacctcaactcgctcgtggcgctgtttgcgaactccgagagcaaagaggtc
aacggtttatgtgtcaagattctgcacaacttggtgcaacgcgatctgatcacggccagc
gagagcagcaagtttttagtggactcgcttgtgatggtgctggacaaaccggccgcacag
attgacatggccactagaacagagatcgtcagcgttctgggcctggtggctaggaatttg
tcgtgctcggtgacggaaataatgccgttgtacaaaagcatggctccgctgctgaaaatt
cacgaggagcgcgaaatgcgcatagcgatttgccaggtgtacttggcgcttggggccaag
tacagcgagctcgagcgtgtgtcgcaagtcgtggccgcgctcaactcgtactccgataaa
cggatccgcgagccagactacgagcagcggctcgaatgctacagaaaaattgacagagag
ttgtacgactcgttctccggctccgagtggctgccggtgatcaacacggcactgttccac
atcaacgacgagacggactcggcgatgcgctcgtcggcatccaatacgttgtgccggttc
atcgacgtttccgagtcgtttgcagaaattttacacgaaatcgtgctgccagtggtgcgt
cctggtttgcgtcgcaaaaacgagctggtgcgccaggaatatatcaacgtcgtggcgcac
gtcgtcgagaaaacagccgagttcccagacatgaaagtgttgctgcacggcggcgacgac
gaggctaatttcttcaagaatattatgcatcctcaggtgcaccgcagacagagggcggtg
agacggctgggcgagacggcacaggagctcgcggactcctccatcgcacactatctactg
cctatgatcgagcggttcgcgttctgggacgacgaaaagtacaggaacctcgccaacgac
acggtggccaccgttgccaagctcgccgcttacgtcagctggaaccagtacagggccatc
ttgagcaggtatgtggcgacgatgacgggcgcgttacagaaggaaaagcacgaggagctg
cgtgacagcgtccaggtggtgactgctgtggccagctcgatgcgggagctgcagcggcgt
ggggccaaggattttcccgctccggagaagctggacgacattgtggtggagatgctgatt
ccgccggtgaagaaggtgttgacgaagagggacgaggagactgtggtgcagcgtgttgct
ctttcggaggcactggtgtcgctggtgatgtgctgttcggcggccaggatcgagacagag
ctgccgggcattttgacgagtatctgtcagattctgcgtgcacggtctgaggagctaaga
gacgcggtgagaaagcatctgggccgcatagccgttggtcttgggtcgccatacttgaag
tttatcatgcaggagctgaagacagcattgactaggggtccgcagatccatattctcagt
ttcacgatccattatcttttggtggtgatggacggtgttttgtctcagggcgatctggat
gagtgtgctgggtacgtgattgacacggtgatgaacgacatttttggcgcggcgagcgag
gagaaggaggccgagggctacaacaagaagatgaaggagatcaagcacaacaagagctac
gacacgggcgagctgctagcaagcaagatgctcttgcagaactttcagcagatcctgggc
ccgatcaagatgcttttgcgtgagaagttggcgttccggacgcagaaacggctggacgag
ctgctgcggcgagtttctatcgggttgcaaaaaaataaagaagcaggctcgacgagtgcg
attttgctgtgccacgaaatctacgggcagtctttggaaaaagacgagacacggaccaag
cgtgtcagcgagacagaggaccattttctggtcaagctggacgcaaagccgctgcggact
cagatggagtactccttgtactccaaggtgttgcagaagttcgcgttcgacctgctacat
gcggtgatttcgaaacacccgcagctgttcacggcgggcaacttggcggattttgtgccg
ctactggagacgagtttgtcgtcgggcgacgagggtgttgttttggcggcactcaagatg
ctgacacagctgtcgcggctggactttgccgaggacgtgaacgcgcaattcacggcttgc
gcgcgggcaacgttgaaaattgtcaaagacttgcctagcaccaacagcgacctgtgccag
agcgcgctcaagtttctgagcgcggtgatcagaaataaggacgggctacagctcaaagat
accgctctcagctaccttctgaaaaagattgagccggacctggacgagccaatgcggcag
ggcgtggcgtttggcttcgtcaaagctctcatcgcgaaacacgtgatgctgcccgagatc
tacgacgtgctcgagtccgtgtcgcggatcatgatcacgagcacttctggcgagatccgc
cagaccgccagaagcgtctactacacatttctgatggagtacgaccagagccgcggccgg
ctcgaaaaacagttcaagatgctgctgggcaatttggagtatcccgcacagagcggccgc
cagagcgtcatggagctgctgcatctgatcgtgcgcaaggccggcaaggacgtgctcgcg
gtggtgtctgcgtcgtttttcattgcgcttgccaacgtgtcggtcaccgacgaggcgccg
tcctgccgcgaaatggcgtcggaggtgctgctggcgatgctcggtcgcatggacgacctg
gcgttcgtggagaaatgcgtggccgcgtggatcgacaacaggaagaacgaacttcttgtg
cggtgcggcctgcacgtgtacaaattgtacgtggacgccgtggggctggacaacgctggc
ttgaacgagactgcgctggcgaaaataaatcacgtgctcgcagccagtgcaaagagcagc
gaggccggcatgtcgtgggagctcgtgtactcgtcgctggtggtgtttgaggcgctgtcg
gagaagactgacgtttacaacgacaaatacgccccgacatgggccgctgtcgtggactgt
ctgctgtatccgcactcgtggatccggctggcttcagcgcggctcgttggacagtacgtc
cagaaatgcgccacggtgagcgaccacacgctgcagacaatcgcataccggtcgttcaga
cagctcagtgcgcctggagtggcgcagagcctggccaccgaggtggcaaagaacctggtg
tatgtgtccaagatctgggcgcagaaagacacgcggtacgtgccagcggacggagagcag
atggagcaaagtgcgctggaatgggcgctcgccagagcgtgcgcggtgctgagaaacgag
tctgcgccgccaaaagacctgctagtcacgaaaaaggccatggtccagtactgcgtgttc
ctggtgagctttctggatgccgagacggtgggtcacgtgatacaacagccgttagacccg
ctggtggtgatttcggagcaggagccggccgtcgaagacacggacgaaaacacactgccg
gcaatggcgctcaagtgtttggagctggttgcacagaaaatcggtgtgagcgagtacaat
ttgctatattcggcaacgaaaaaagccatcagcgagcggcgccaggagagaaagaccaaa
cgtgcacagctgtctctcaataaccctgccgcggcagccaagcggaagctcaagaagcac
gcgcgcaccagagaaaagagaaagcacctaaaggacgaaaatggactataccgtccaaaa
aggaaaaagctttaa
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