Ogataea parapolymorpha: HPODL_00464
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Entry
HPODL_00464 CDS
T08137
Name
(RefSeq) putative ATP-dependent RNA helicase
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
opa
Ogataea parapolymorpha
Pathway
opa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPODL_00464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opa03019
]
HPODL_00464
Enzymes [BR:
opa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HPODL_00464
Messenger RNA biogenesis [BR:
opa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
HPODL_00464
mRNA degradation factors
3'-5' decay
Ski complex
HPODL_00464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
Ski2_beta-barrel
ResIII
Helicase_C
MTR4-like_stalk
DEXQc_Suv3
MTR4_beta-barrel
PhoH
DUF6594
Motif
Other DBs
NCBI-GeneID:
25769935
NCBI-ProteinID:
XP_013935889
UniProt:
W1QHH2
LinkDB
All DBs
Position
III:complement(531090..534776)
Genome browser
AA seq
1228 aa
AA seq
DB search
MTTQLLDVLHDLKVGPKDNNVWLDPTTKTATPPPPVSEEGVLADIKRTYLSPTNELPWDL
LDKFQQVPEVGTQDRERFYRSMLTIPPTLKRTTVRFQRSGIEGSIVSYKETFDRTILESG
NSAVTSLSVKRKFGGKDDAIKGNSGFLPFQPGGLTANEEPKDSTKFLHRDENGLLDIPQG
LSRGLALKDGTHTDLTELEQKQVSDEQETVQDQEPEIIQEADVEDEISKFIPASMLTRPS
KRKPALPPKREWAHVVDVNHAIPNFDELVPNPARTWPFELDTFQKEAVYHLEKNDSVFVA
AHTSAGKTVVAEYAIALANRNMTKTIYTSPIKALSNQKFRDFKESFDDVDVGVITGDVQI
NPEANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDIERGVVWEEVIIMLPEHIK
VVLLSATVPNTYEFASWVGRTRQKDIYVISTSKRPVPLEIFVWAKDDIFKLIDANGSFQQ
KNFRLHEDKLLKKKDVPDTNDKGKSGAVVRGGARGGARGGRGGARGGSTMSGKMFKRDGP
NKNSWHNLVTFLQKKDLMPAVIFVFSKKRCEEYADTLRGVNFCTAKEASQIHMFIDKAVS
RLKKEDRELPQILKVREMLSRGIAVHHGGLLPIVKEIIEILFSKTLIKVLFATETFAMGL
NLPTRTVVFSELRKHDGTGYRNLLPGEFTQMSGRAGRRGLDSTGTVIVMAYNQPLEEFAF
KEVTMGTATKLSSKFRLTYNMILNLLRIEALRVEEMIKRSFGENTTQSLLPEHEIEIAKL
EKQLRDLKKQNISEEDNAKLNLFYNTMEEMKEQYGDLVQESMKLLYYQKRLKVGRLVVYR
DRDTNQSYPAVTARWSNGDDKITLLTLDVQQSSKNQFNCVYTTNFGQPYVAKFFSKWKAG
TNFKFIDVPLNDIEFVGAYSVRSYINGIINKDPKSISDFKTEVGQLLRYQRKWGELDWTA
FQNPNMIEILTRIDELRDTVMNCFADEKFDSLVEAEYPTFMNRKNIEKRIESLKSLMSEE
NLELLPDYEQRLEVLKQLEFVNDQLTVTLKGRVACEINFGFELIVTELVFENILGTFTSE
EIVALLSCFVYDGKRGNDEGPAPLCTPRLESGKDKIVEIVEQVMKVSNENKIILTAEEEQ
FLENNRFGLVNVVYEWARGQSFKDIMELSNDENEAEGTIVRVITRLDEVCRVVMNCALIV
GDSELHMKMGEAQEKIKRDIVFCASLYL
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgactactcagctgctggatgtactccatgatttgaaagtcggacccaaagacaataat
gtctggctcgatccaactaccaagacagccactcctccgcctcctgtgtctgaagagggt
gttctagctgatatcaagagaacgtacctttctcccaccaatgaactgccatgggatttg
ctggataagtttcaacaagtgccagaagttggcacacaggacagagaacggttctaccgt
tccatgttgacgattcctccaacactcaaacgaaccactgtccgtttccagcgaagcggc
attgagggttccatcgtttcctacaaggagactttcgaccgcaccatattggagtctggt
aactctgccgtgacatcactgtctgtcaaacggaaattcggtggtaaggacgacgcgatc
aaaggaaactctgggtttttgcccttccagcctggcggattgaccgccaacgaggagccc
aaggactctacgaaatttcttcacagagatgaaaacggattgctggacattccgcagggc
ttaagtcgcggtttggcactaaaggacggcacgcatacagatctgacagagctggaacaa
aagcaggtgagcgatgagcaagagacggtccaagatcaagagccggagattattcaagaa
gccgacgtggaagacgaaatctcaaaattcattcccgccagtatgctcaccaggccgtcg
aaaagaaagcctgctcttccacctaaacgcgagtgggcgcacgttgtggacgtgaaccac
gcaattcccaattttgacgagctggtccccaatccagcacggacctggccttttgagctg
gataccttccagaaagaggccgtctaccatctcgaaaaaaatgactctgtctttgtggct
gctcatacttcggctggtaagactgtggttgctgagtacgctattgcgttggcaaacaga
aacatgacgaaaacgatctacacgtcgcctatcaaagcacttagtaaccaaaaattcaga
gacttcaaggaaagttttgacgacgtcgacgtgggagtcatcaccggtgatgtccaaatc
aatcccgaggcaaactgcctgattatgacgactgaaattctgcgttccatgctttataga
ggcgcagatttgattagagacgtggagttcgtcattttcgacgaggtccactacgtcaac
gatatagaaagaggagtggtttgggaagaggtcatcattatgcttcccgagcacattaag
gtggtgttgctctctgctaccgttccaaatacctatgaattcgcttcctgggtcggacgt
accagacagaaagacatttatgttatttcgacttccaagcgtcctgtgccgttggaaata
tttgtgtgggccaaggacgatattttcaagctaattgatgctaacggatctttccagcag
aagaatttcagattgcacgaggacaagcttctcaaaaagaaggatgttcctgatactaac
gacaagggaaaaagtggggctgtggttcgcggcggagcacgaggtggtgcgagaggcggc
cgtggaggggcccgtggaggctcaactatgtcaggaaaaatgttcaaaagagacgggcca
aacaagaactcgtggcacaatctggtgacgttcttgcaaaagaaagacctgatgccggca
gtcatttttgtcttctccaagaaacgttgtgaagaatacgcagacactttgcgaggagtg
aatttctgcactgctaaggaggcgtcacaaatccatatgttcattgacaaagctgtttcc
aggcttaaaaaggaagatcgagagctgcctcagatcctcaaagtccgtgaaatgctttct
cggggtattgcggttcatcacggtggtcttttgccaatcgtgaaagagatcattgagatc
ctattttccaagacccttatcaaggttctttttgcaacagagacttttgccatgggactt
aaccttccgacaagaactgttgtttttagcgaattgcgcaagcacgacggaacaggatac
agaaacctgcttcctggtgaatttacgcaaatgtcaggccgcgctggtcgccgtggactg
gatagcacgggtactgtgattgtgatggcttacaaccaaccgctggaggagtttgcattc
aaagaggtgaccatgggcactgctacaaagctatcgtcgaaattcagactcacatataac
atgattctaaacctgcttcgtatagaggcattgagagtggaggagatgatcaaaagatct
tttggtgagaacacaactcaatcgctgttgcctgaacatgaaattgagattgccaagctt
gaaaagcagctcagggatctgaaaaaacaaaacatttccgaggaagataacgccaaactt
aacctgttctacaatacgatggaggaaatgaaggagcagtatggcgatcttgtgcaggag
agtatgaagctgctgtactaccaaaagcgactcaaggtcggacgtcttgttgtttaccgt
gaccgtgacacaaaccagtcatatcctgctgtgacggctagatggagcaacggtgacgac
aaaataacccttttgactttagatgtccagcaaagctctaagaaccagttcaattgtgtc
tatacgaccaattttggtcagccttatgtggcaaagttctttagcaagtggaaagcgggc
accaatttcaaattcattgatgttcctcttaatgatatagagtttgtcggtgcatactct
gtgcggtcttatatcaatggtatcattaacaaggaccctaaaagcattagtgatttcaag
acggaggtgggccagcttctgcgataccaacgtaaatggggtgagctggactggaccgca
ttccagaacccaaatatgattgagatcttgacacgcatcgatgagctgcgggacacggtg
atgaattgttttgctgacgaaaagtttgattcgcttgtcgaagcagagtatccaactttc
atgaaccgcaaaaacattgagaaacgcatagaatctttgaaaagtctgatgagcgaggag
aacttggagcttttgcctgattacgagcaacgtttggaagtgttgaaacagctggaattt
gtcaatgaccagctgacggtcacgctaaaaggacgtgtcgcttgtgagatcaatttcggt
ttcgagttgattgtcaccgaactagttttcgagaacatcttgggaacttttaccagcgag
gaaattgtggctctactttcgtgctttgtttatgacggaaaacggggaaacgacgagggc
ccagctcctctgtgtacgccacgcctggaaagtggaaaagacaagatagtggaaatcgtg
gagcaagtgatgaaggtgtccaacgagaacaagatcatattgacagcagaagaggaacag
ttcctcgaaaacaaccggtttgggttggtgaacgtcgtgtacgaatgggccagaggacag
tcgttcaaggatattatggaactgagcaacgacgaaaacgaagcggaaggaactatcgtc
agagtcatcacaagattagatgaagtgtgtcgcgtggtgatgaactgtgcgcttatcgtg
ggtgattctgaactacatatgaagatgggcgaggctcaagaaaaaatcaaacgagacatc
gttttctgtgcttcgctgtatttatag
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