Ogataea parapolymorpha: HPODL_00580
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Entry
HPODL_00580 CDS
T08137
Name
(RefSeq) Exosome complex component RRP4
KO
K03679
exosome complex component RRP4
Organism
opa
Ogataea parapolymorpha
Pathway
opa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPODL_00580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opa03019
]
HPODL_00580
Messenger RNA biogenesis [BR:
opa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
HPODL_00580
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
HPODL_00580
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
ECR1_N_2
RRP40_S1
DUF2110
Motif
Other DBs
NCBI-GeneID:
25770051
NCBI-ProteinID:
XP_013936014
UniProt:
W1QHV2
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All DBs
Position
III:736575..737561
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AA seq
328 aa
AA seq
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MIISISVPSKPEASDTEVGSSVVTPGELITDDPTWMRGHGTYFLNDKTYSSVAGTVLKVN
KLLSVVPFKGRYSPETGDHLVGRIIDVGQKRWKVDIGGEHDAVLMLGSVNLPGGILRRKS
ESDELQMRNFLKEGDLLNAEVQSLFSDGSASLHTRSLKYGKLRNGVFVAVPSKLIVRAKN
HSHDLPGNVSIILGVNGYCWIYKTPLSSAADHSASTAKTNAELSSAASGYYQPGQGSVSI
TRLEQESSWDIYSDKNDALSASIKDTISRYKNCLLSLSQCNIGINEVRLVRAYEISLGYG
DTNLLFREEVRQSIGEDVIAQEKMRGAG
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgattatcagcattagcgtgccgtcaaagccagaagctagcgacaccgaggttggttca
tcagtggtcactccgggagagttaattacagacgatccgacatggatgcgcggccacggg
acgtactttctaaacgacaagacatactcttcagttgcaggaaccgttctcaaggtgaac
aagctgctgagcgtggttcccttcaaaggcagatattctccagagacaggagaccatcta
gtgggcagaattatcgatgttggacagaaaagatggaaagtggacatcggaggtgaacat
gacgcggtgcttatgctgggatcggtcaacctgcccggaggtattttgcgaaggaaatcc
gagagtgacgaattacagatgcgtaattttttaaaagaaggcgacctgctaaacgccgag
gtgcaatcgctcttttcggacggcagcgcctccctgcatacccgctcactgaaatacggg
aaacttcgaaacggcgtgtttgttgcggtgccttcaaaactgattgtgagagcgaaaaac
cattctcacgacttacccgggaatgtgagcatcattttgggtgtcaacggctactgctgg
atctacaaaactccgctttcttctgctgcagatcactctgcttccacggctaagactaat
gcagagttgtcttctgcggcttccggttattatcaacccgggcaaggtagtgtatcaatc
acgagattggaacaggagtcgtcgtgggacatttacagcgacaagaacgacgcgctttcg
gccagcatcaaggacaccatttcgagatacaagaactgtttgctgagcttgagccagtgc
aacatcggaatcaacgaagtccggctcgtgagggcctacgaaattagtttagggtacggc
gatacaaacttactatttcgggaagaggttcggcagtcgattggcgaggacgtgatcgcg
caagaaaaaatgcgaggggcagggtaa
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