Ogataea parapolymorpha: HPODL_00674
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Entry
HPODL_00674 CDS
T08137
Name
(RefSeq) ATP-dependent RNA helicase fal-1
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
opa
Ogataea parapolymorpha
Pathway
opa03013
Nucleocytoplasmic transport
opa03015
mRNA surveillance pathway
opa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HPODL_00674
09122 Translation
03013 Nucleocytoplasmic transport
HPODL_00674
03015 mRNA surveillance pathway
HPODL_00674
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opa03019
]
HPODL_00674
03041 Spliceosome [BR:
opa03041
]
HPODL_00674
03009 Ribosome biogenesis [BR:
opa03009
]
HPODL_00674
03012 Translation factors [BR:
opa03012
]
HPODL_00674
Enzymes [BR:
opa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPODL_00674
Messenger RNA biogenesis [BR:
opa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
HPODL_00674
mRNA cycle factors
Stress granule specific factors
HPODL_00674
Spliceosome [BR:
opa03041
]
Complex C
Other components
EJC/TREX
HPODL_00674
Ribosome biogenesis [BR:
opa03009
]
Eukaryotic type
90S particles
Helicases
HPODL_00674
Translation factors [BR:
opa03012
]
Eukaryotic type
Initiation factors
eIF-4
HPODL_00674
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
AAA_30
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
25770143
NCBI-ProteinID:
XP_013936110
UniProt:
W1QI06
LinkDB
All DBs
Position
III:complement(904724..905914)
Genome browser
AA seq
396 aa
AA seq
DB search
MDFDKELDKSLKVQTSGNIPVIGSFEEMSLKESLLKGIYAYGFEAPSAIQSRAIAQVIQG
RDVIAQAQSGTGKTATFTIGMLQVVDTSKFETQALVLSTTRELAAQIRSVISALGDYMKI
RCHACVGGKSVGEDIRALSKGQHIVSGTPGRVLDMIKRRTLSIRNVKMLVLDEADELLGK
GFQDQISEIYQYLPPSTQVVVVSATLPKAVLSLTNKFMSDPVKILVKRDELTLEGINQYY
IQVEKEDWKFDTLCDLYDSLTITQAVIFCNTKKKVDWLSESLRKANFTVSSMHGDMQQDE
RDRVMDEFRLGNSRVLISTDIWARGIDVQQVSLVINYDLPYDKENYVHRIGRSGRFGRKG
VAINFVTRNELGDLTEIEEFFSIKIDEMPSDLSDVL
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggattttgataaagagttggataaatccttgaaagtgcaaacttcggggaacattccg
gtaataggaagctttgaggagatgagtttaaaggagtcccttttaaaaggaatctatgca
tatggctttgaggcgccgtctgcaatccagtctcgagcaatcgcccaagttattcaagga
agagacgttatagctcaagcacaatcaggaacagggaagactgccactttcacaatcggg
atgcttcaagtcgtggatacaagtaaattcgagacccaagcattggttttatcaactacg
cgggaacttgcagctcagattagaagtgtcatcagcgctttgggtgattatatgaaaatt
cgatgccacgcgtgcgtaggcgggaagagtgttggggaggatataagggcactctcaaaa
ggacagcatatagtaagtggcaccccagggcgtgttttagacatgatcaagcgccgcaca
cttagcataagaaatgtaaaaatgcttgttttggatgaagccgacgagctgcttggcaag
ggatttcaagatcaaatcagtgaaatctatcagtatttacctccatcaacgcaagtggtg
gtcgtatcagcaacgctaccaaaagctgttctctcgctcaccaataaattcatgtcggat
ccagtcaaaatattagtcaagagagacgaactaactttagaaggaataaatcaatattat
attcaggtcgagaaagaagattggaaatttgatacgttgtgtgatttatatgactcatta
acgattactcaagctgtcatattttgcaataccaagaaaaaggttgactggttgagcgaa
tcacttcgaaaagcaaactttactgtttcctcaatgcatggcgatatgcaacaagacgag
agggatcgcgtgatggatgagtttcgacttggtaactctagagttctcatatcgacagac
atttgggcgcgaggaattgatgtgcaacaggtctcgttagtcatcaattacgacctgcct
tatgataaagaaaactatgtccatcgtatcgggcgctctggtcgctttggaagaaagggc
gtagcgataaactttgtcacgaggaacgaattgggcgatttgactgaaattgaagagttt
ttcagcatcaagatcgatgaaatgccatcggatttgagtgatgtgttatga
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