KEGG   Ogataea parapolymorpha: HPODL_00703
Entry
HPODL_00703       CDS       T08137                                 
Name
(RefSeq) hypothetical protein
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
opa  Ogataea parapolymorpha
Pathway
opa03018  RNA degradation
opa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:opa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    HPODL_00703
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HPODL_00703
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:opa03019]
    HPODL_00703
   03041 Spliceosome [BR:opa03041]
    HPODL_00703
Messenger RNA biogenesis [BR:opa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     HPODL_00703
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     HPODL_00703
Spliceosome [BR:opa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    HPODL_00703
SSDB
Motif
Pfam: LSM RimP_C SM-ATX Gemin6
Other DBs
NCBI-GeneID: 25770172
NCBI-ProteinID: XP_013936139
UniProt: W1QI84
LinkDB
Position
III:<963164..>963499
AA seq 98 aa
MSALKSFLDEKVKVVTSDGRLFIGVLEGFDQSSNIVLSKSFERIFSPTEPTKDLELGSYL
IRGEQIVIVGMLDDEEESQTDYDKIHGFQLKDTKNALR
NT seq 297 nt   +upstreamnt  +downstreamnt
atgtctgctttgaagtcttttctagatgaaaaagtcaaagtggtaacttcagacggcaga
ctgtttattggagttcttgaaggatttgatcagtcctcaaatattgttctttcaaaaagt
ttcgagcgcatattctctccgactgaacctacaaaagacctagagctcggatcatatctc
atacgaggagagcagattgttatcgttgggatgctggacgacgaagaagaatcacagacg
gattacgacaagatacatggctttcaactcaaagacacgaagaatgcgcttagatag

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