Ogataea parapolymorpha: HPODL_00774
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Entry
HPODL_00774 CDS
T08137
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
opa
Ogataea parapolymorpha
Pathway
opa03018
RNA degradation
opa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HPODL_00774
09123 Folding, sorting and degradation
03018 RNA degradation
HPODL_00774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opa03019
]
HPODL_00774
03041 Spliceosome [BR:
opa03041
]
HPODL_00774
Messenger RNA biogenesis [BR:
opa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
HPODL_00774
mRNA degradation factors
5'-3' decay
Lsm complex
HPODL_00774
Spliceosome [BR:
opa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
HPODL_00774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF6338
SM-ATX
Motif
Other DBs
NCBI-GeneID:
25770243
NCBI-ProteinID:
XP_013936212
UniProt:
W1QH13
LinkDB
All DBs
Position
III:complement(1077741..1078091)
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AA seq
116 aa
AA seq
DB search
MLPLYLLTSVKTQPILVELKSGETVNGLLENCDSWMNLTLNDAVTVDLHGKRFEKVPEVY
VRGNQIKYVRMSNDIIDKFKEQNRGPNRQRPMQKRQQRNGRDRDPRDRRNGNQRTK
NT seq
351 nt
NT seq
+upstream
nt +downstream
nt
atgctgccattatatctactcacgtcggtgaaaacacagcctattttggtggaattgaag
tctggagagactgtgaatggactactagagaactgcgactcctggatgaatctgacactc
aacgatgccgtcactgttgacctccacggcaaacgttttgaaaaggtgcccgaggtgtat
gtgcgcggaaaccagatcaagtatgtgcgcatgagcaacgacatcattgataagttcaag
gagcagaacagaggcccgaacagacaacggcctatgcagaagagacagcagagaaacgga
agggacagggacccaagagacagacggaacgggaaccagagaacaaaatga
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