Ogataea parapolymorpha: HPODL_01041
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Entry
HPODL_01041 CDS
T08137
Name
(RefSeq) Subunit of the CCR4-NOT complex
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
opa
Ogataea parapolymorpha
Pathway
opa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPODL_01041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opa03019
]
HPODL_01041
Messenger RNA biogenesis [BR:
opa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
HPODL_01041
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
HPODL_01041
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Ortholog
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GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF2748
Syntaxin_2
Erythro_esteras
Motif
Other DBs
NCBI-GeneID:
25770507
NCBI-ProteinID:
XP_013934966
UniProt:
W1QGF6
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Position
IV:272428..274299
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AA seq
586 aa
AA seq
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MSHRKLQQEIDRVFKKIGEGLEIFNTLYERHENASNGSQKEKLENDLKKEIKKLQRFREQ
VKNWQATNEVKDKERLNENRRLVEQAMEKYKVVEKGSKTKAFSDESLASFDDPQEDNEAI
EFVRETLDEIQRQEEALESELDKLGAKKGKKTSAVDERKSEIEDLLEIHQFHREKLEVVL
RLLESHVLRPEDIMNIQEDIKYYLEENQDPDFVNDDTIYDDLNLEVDENTLIDGSSAQNG
THKEEESVLASTAPISVSVPDTTPQKKKESTPTPSTVQASPVATAKPPAPVKPVQTPPVS
VPKMATPTTSLANLAGTLSSVSTLSTLKPAPVPAKPVGELKWAAAVSQTANGRPKPEEKP
ATPATPLSTLNTNALNAASVLEALKKQRPQDGASHSNPESRTASSTAGVGSAGSGDVSND
PNFRFLPPGIQSTILSFVMARNRPESEKTPSLSSVGAMLAVPRRFSPLSEGTYPPGLEAQ
RVSAIWNSVRVSNNIEIDSQNVDTATLFYAYYYALSQKERDVAASVLASRLWRVNNDKTM
WYQRHSQVKVSGDGFEISDFNVFDAEKWSFYEKKNHRVDYSQFGKS
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcataggaagttacaacaggaaattgaccgcgtgttcaagaagatcggggagggg
ctggagatattcaacactctgtacgagcgccacgagaatgcctcgaacggctcgcagaaa
gagaaactggagaacgacctcaagaaggagattaagaagctgcagcggtttcgagaacag
gtgaagaattggcaggccaccaatgaggtcaaggacaaggagcggctcaacgagaaccgt
cggctggtcgaacaggcgatggaaaagtacaaggtggtagagaaggggtcgaagacaaaa
gcgttttctgacgagtcgctggccagttttgacgacccgcaggaggacaacgaggcgatc
gaatttgtgcgggagacgctggatgaaattcaacgtcaggaagaggcgctggagagcgag
ctcgacaaactgggcgccaagaagggcaagaagaccagtgccgtcgacgagcgcaagtcc
gagattgaggatctgctggagatccaccagttccacagagaaaagctcgaggtggtattg
cgattgcttgagagccatgtgttgcggcccgaggacataatgaatatccaagaggacatc
aagtattatttggaagagaaccaggatccggactttgtgaatgacgacaccatctacgac
gacttgaacctggaagtcgatgagaatacgcttattgacggcagctctgcgcaaaacggc
acgcacaaggaggaggagtctgttcttgcgtcgacggcgccgatctctgtgtctgtgccc
gacaccacgcctcagaagaagaaggagagcacgcctacaccgtccaccgttcaggcctcg
cctgtggcgaccgccaagccaccggcccctgtgaagcctgtgcagacgccgccggtgagc
gtgcccaagatggccacgccgacgacgtcgctggccaatttggccggcactttatcgtcc
gtgagcacgctgagcacgctgaagcctgctccggtgcccgccaagcctgtgggagagctc
aaatgggcagccgcagtgagccagaccgcgaacgggcggccgaaaccggaggagaagcct
gccacgccggccacgccgctctcgacgctcaacaccaacgcgctgaacgccgccagtgtg
ctggaggcgctgaaaaaacaacgacctcaggacggagcgtcgcacagcaaccctgagtcc
cggacggcgtccagcacggcgggcgttgggtctgctgggtccggcgacgtttccaacgac
ccaaacttccggtttctgcctccaggcatccagagcacgatcctgtcgtttgtgatggcc
agaaaccggccagagtccgaaaagacgccgtcgctgtcgagcgtcggcgccatgcttgcc
gttccccgtcgcttctcgccgctcagcgagggaacgtatccgccgggattggaggcacag
cgggtttcggcgatctggaatagcgtgcgcgtgagcaacaacatcgagatcgactcgcag
aacgtcgacaccgccacgctgttctatgcctactactacgccctgtcacagaaagaaaga
gacgtcgccgcgtcggtgctggcctccaggctctggagagtcaacaacgacaagacgatg
tggtaccagcgtcattcgcaagtgaaagtgtcgggcgacggctttgagatctccgacttc
aacgttttcgacgcggaaaaatggagcttctacgaaaagaagaaccacagggttgactac
tcccagtttggaaaatcctag
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