Ogataea parapolymorpha: HPODL_01089
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Entry
HPODL_01089 CDS
T08137
Name
(RefSeq) DNA repair helicase RAD3
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
opa
Ogataea parapolymorpha
Pathway
opa03022
Basal transcription factors
opa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HPODL_01089
09124 Replication and repair
03420 Nucleotide excision repair
HPODL_01089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opa03021
]
HPODL_01089
03036 Chromosome and associated proteins [BR:
opa03036
]
HPODL_01089
03400 DNA repair and recombination proteins [BR:
opa03400
]
HPODL_01089
Enzymes [BR:
opa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
HPODL_01089
Transcription machinery [BR:
opa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
HPODL_01089
Chromosome and associated proteins [BR:
opa03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
HPODL_01089
DNA repair and recombination proteins [BR:
opa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
HPODL_01089
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
25770554
NCBI-ProteinID:
XP_013935019
UniProt:
W1QF79
LinkDB
All DBs
Position
IV:complement(<357267..>359441)
Genome browser
AA seq
724 aa
AA seq
DB search
MPSGTGKTISLLSLTVAYQMHYPEHRKIVYCSRTMSEIEKALIELHKLMEYRSKELGFVE
DFRGLGLTSRKNLCLHPVASRERKGVVVDEMCRRMTNGQLKARIEQGQASTDQLCSFHEK
LYEKDPANLVPPGVYSFEQLMKYCKMEGTCPYFTIRRMMPFCNIIIYSYHYLLDPKIAER
VSKELSRDSIIIFDEAHNIDNVCIESLSLDLTEDVLRRASKGANALARKVEEVKKTDSKR
LQDEYEKLVEGLRESEIYHTDEDAFMVNPVLPDDVLTEAVPGSIRRAEHFISFLKRFIEY
LKTRMKVLHVISETPVSFLQHLKQLTFIDRKPLRFCSERLSLLVRTLEVVEIEEFMALKD
IATFGTLVSTYDTGFVLILEPYETENATVPNPILRFACLDASIAMKPIFERFSSVIITSG
TISPLDMYPRMLNFETVVQESYTMTLDRRSFLPMVVTKGSDQVAISSRFEIRNDPSVVRN
YGTLLIEFSKITPDGMVVFFPSYLYMESIISQWQTMGILDEVWKYKLILVETPDAQETSL
ALETYRKACSNGRGAVLLSVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEF
LRDHYQIRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFAKKKSQLPKWIAQAL
SDADINLSTDMAIASAKKFLRTLAQPIEQKDQEQGVSVWTLDQLEKYQKEQNERFSVTNI
EIQG
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgccctctggtacgggcaagaccatttctctgctttcgctgactgtggcataccaaatg
cactatcccgaacaccgcaaaattgtgtattgctcgcgtaccatgtcggaaatcgaaaag
gcgctgatagagctgcacaaactaatggaatatagatcaaaggaactaggctttgtggaa
gatttcagaggactgggattgaccagtcgtaaaaatctctgtctgcaccctgtggcgtcc
agagaacgaaagggcgtggttgtggatgaaatgtgtcggcgaatgaccaacggacaattg
aaagcacgcatagagcaaggccaggcaagcacagaccaactttgctcattccacgagaaa
ctgtacgaaaaagaccctgccaaccttgtcccaccgggcgtctactcgttcgagcaactc
atgaaatattgcaaaatggagggaacgtgtccgtacttcaccatcagacggatgatgcca
ttttgtaacatcattatttattcgtaccattatttattggacccaaagattgcagagaga
gtgtccaaggagctttcgcgagacagtatcatcatatttgacgaggcgcacaatatcgac
aatgtgtgtattgaatctctttcgctggatctgacagaagacgttttgcgccgcgcaagc
aagggtgccaatgcattggcaagaaaagttgaggaggtgaagaaaactgacagcaagcga
ctccaggacgaatacgagaagctcgtcgaagggctcagggagtctgaaatataccacacc
gacgaggatgcgttcatggtgaacccggttctgccggacgacgttttgaccgaggccgtt
cctggaagtatccgccgtgctgagcactttatatctttcctcaaacggttcatcgaatat
ctcaagacacggatgaaggttcttcatgttatcagcgaaacgcctgtttcatttctgcag
cacttgaagcagctgacgttcatcgaccgcaaaccattgaggttctgctccgaacggctg
tcgttacttgtgaggacgcttgaagtggtggaaatcgaggaatttatggctttgaaagac
atcgccacgtttggtactctcgtttccacctacgacaccgggtttgtgctgattctcgag
ccctacgagacggaaaatgccactgttccaaacccgattttgcgatttgcgtgtcttgac
gcgtccatcgcgatgaagccgatattcgagcgcttctcctctgttatcatcacctctggt
accatctctccgctggatatgtatccaagaatgttgaatttcgagactgttgtccaggag
tcgtacaccatgactctggaccgaagatcgttcctgccaatggtcgtcactaaaggttca
gatcaggtggccatttcgtcgcggtttgaaattcgaaacgaccccagtgtcgtgcggaac
tacggcacattgttgatcgagttttccaaaatcactccggatggaatggtggtcttcttt
ccgtcgtatctatatatggagagcattatctcgcaatggcaaaccatgggaattttggac
gaggtctggaagtacaagctgattctggtggagacgccggatgcacaggaaacgtcactg
gcactcgaaacatatcgaaaggcctgctccaacgggagaggcgcggtgcttctttctgtt
gcgcgtggaaaagtgtcggaaggaattgattttgaccaccattatggccgcacggtgctc
atgatcggcatcccgttccagtacacagaaagcagaattttgaaagccagattggagttc
ctcagagaccactaccaaattagggagaacgacttcctctctttcgacgcgatgcggcac
gccgctcaatgtctcggacgagttcttcgaggaaaagatgattacggtgtaatggtgttg
gcggacagaagatttgcgaaaaagaagtcgcagcttccaaaatggattgcccaagcactc
tccgatgcagatataaatctctccacagatatggctatagccagtgccaaaaagttcctg
cggacactggctcagccaatagagcagaaggaccaggaacagggagtcagtgtctggact
ctggatcagttggaaaaatatcaaaaggagcagaatgaacgcttttctgtgaccaacatc
gagatccagggctag
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