Ogataea parapolymorpha: HPODL_01125
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Entry
HPODL_01125 CDS
T08137
Name
(RefSeq) U3 snoRNP protein involved in maturation of pre-18S rRNA
KO
K14544
U3 small nucleolar RNA-associated protein 22
Organism
opa
Ogataea parapolymorpha
Pathway
opa03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
HPODL_01125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
opa03009
]
HPODL_01125
Ribosome biogenesis [BR:
opa03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
HPODL_01125
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Nrap_D5
Nrap_D2
Nrap_D4
Nrap
Nrap_D3
Nrap_D6
Motif
Other DBs
NCBI-GeneID:
25770590
NCBI-ProteinID:
XP_013933099
UniProt:
W1Q9F0
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Position
VI:58343..61747
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AA seq
1134 aa
AA seq
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MVKRDREPESGVNDTEQGPAAVEVNHRPHKKAQLTSQDVQIARETAELFKSNIFKLQIDE
LVKELRLKDSHCKLIERVLHRLYEIIQDIPASEAYSLEEAESYFEKSKNEVAIPFPDPKP
TSINYKLQYESPTDVSLVGSFGLKTGIQQPDGMAVDVSLTMSKSMFQPKDYLNYKALYKR
AFYIAYLADQLITLTAKNHLPVRISYEYVNGDRLCPSIRIDSVTPDKVHDNDLVFEDTNF
RIRLLVGFEYGLFESKKLLPDRNCVRIQTDDELPPTPLYNSSILSSTTYKYYLKYLYATK
KTTDSFRDATVLGKLWLRQRGFGSHFNKGGFGHFEFAVLMAALLAGGGENGNKVLLHGYS
SYQLFKGTIKYLATQDLVDDGYLSFSSIVGDNGSVYKKGGFNIPTLFDKTTKINILWKMT
ASSYQVLKKQAAETLDLLNDVVQDRFKQTFIYKNTQKYLQYDMFVSVPLKDLNQQDKFGP
IEKITFLTYENFVCSKVHRLVSRALAERASHVVVRLSNTEDKWGIQKRRPDTQDKQVEIG
LYLNATECEKKITKGPLHNDEENAIRFRSFWGAKAQVRKYKDGNIQYSCLWPANELTVVS
ILKYIFELHISSSARLEFNTDRFWKMLPVPLTSNLMQLIPSNFQQLKNSYSELCKVLNKI
DLPLSVKSVLPASPALRNTSLILPVPYAVSNPDFFNESILQFESSTKWPDELLALEQTKT
AFLLKINDYLAKNTNYKSYLEEDRTSVPYNTKIKVLRVLSPDGYGFSFRVLTERDEVLYL
RAIENAPEKQRKTVADIYLAFNQKYMGSVKHHRAIASLSTYFPFYSATVRLFKRWLDAQL
LLSHFNDELVELLVMKVFVDPAPYSVPASVEAGFLRTLQFLSQWNWKEDPLVLDLAKDLE
KSGNYIDLVSEKLTVQTYQSITGNFSKLRKEDPQAIKTQLFVASKEDPSGKLWSFGLSLP
IATRLTALSKAAVAAVSKTLNQKTLKLIFTPALKDYDIVLKIRTPAELASKSGILPENKF
KNLVATSLVASDDVSSEQDPVPAFCDELRARFSNVMLISCGKYTGLGKEGRCNVIAGILN
PVIGNSKKKFRVNVGYDVEPTDDEQLKLNKHSLLSQIALLGGDLIESVDLNRWE
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggttaaaagagacagagagccagaatcgggcgtcaatgacactgagcagggtcctgcg
gccgtcgaggtgaaccatagacctcacaagaaagcccagttgacctcacaggatgttcag
atcgcccgagaaacggctgaactgtttaagtccaacatcttcaagcttcagatcgacgag
cttgtgaaggaactgcgtctcaaggactcgcactgtaagttgattgagcgtgttcttcac
cgactctacgagattattcaggacatccccgcctcagaggcatattctctagaggaggct
gagagttactttgaaaagtcgaaaaacgaggttgcaataccattccctgatcccaagcct
acctccattaactacaaactgcaatacgagtccccaacagacgtttcattggttggatca
ttcggtttgaaaactggcatccaacagccagatggcatggcagtcgacgtttctctcacc
atgtctaagtccatgttccagccaaaagattatttaaactacaaagctctctacaaaaga
gctttttatatcgcttaccttgcagaccagctgatcacgctaacggcgaaaaatcacctg
ccagtgagaatttcctacgagtacgtgaatggcgatagattgtgtccaagcatcaggata
gacagtgtcacgccagataaagttcatgacaacgatctagtatttgaagacacaaacttc
agaatcagacttctggtcggattcgaatacgggttgttcgaaagcaaaaaacttcttcct
gataggaactgcgttcgcattcaaaccgacgacgagctacctccaacgcctctgtacaac
tcctccatcttgtcctccacaacctacaaatattatctcaagtacctatacgccacaaag
aagaccacagactcctttagagatgcgacagtgctaggaaagctctggctcagacaacgt
gggtttggctcccattttaataaaggcggttttggacattttgagtttgccgtgctgatg
gctgcacttttggcgggcggtggtgagaacgggaacaaggtgttgctccatggttactct
agttaccagctatttaaagggacgatcaagtacttggccacgcaagacctcgtcgatgac
ggatatctctcattcagctccattgttggcgataatggctcagtttacaagaagggcgga
ttcaacattccaactctgttcgacaagaccaccaagatcaacattttgtggaaaatgacg
gcttcttcctaccaagtgctgaaaaagcaggcagctgagacactggacctcttgaacgat
gttgtccaggaccgctttaaacagacatttatctacaaaaacacacaaaagtacttacaa
tatgacatgtttgtgtcagttccattgaaggatttgaaccaacaagacaaatttggtcct
atagagaaaatcactttcctgacatacgagaattttgtatgcagcaaagtccacaggctg
gtttcacgtgcattggctgaaagagcttctcatgttgtcgttagactttccaatactgag
gacaaatggggcattcaaaagaggcgtcctgacacccaggataaacaagtcgagatcggg
ctgtatttgaatgcgaccgagtgtgaaaagaaaatcaccaaaggccctcttcataatgat
gaggaaaacgctatccgatttcgctccttttggggcgcaaaagctcaagtcagaaagtac
aaagatggaaatatacagtacagttgtctgtggcctgccaacgaactcacggtggtgtct
attctgaaatacatatttgagcttcatatcagttccagcgcaagactcgaattcaataca
gacagattttggaagatgctgcctgtgccgctgacgtccaacttgatgcaactaattccg
tccaatttccagcagctgaaaaactcgtactccgagttatgcaaagttctaaataaaata
gacctcccgctgagtgtcaagtccgttttgccggcctcgccagctttgcgaaacacctcc
ctaatactgcccgtcccttatgccgtgtcgaacccagactttttcaacgagtcgattctc
caatttgagtcgtcgacaaaatggccggacgagctgcttgctctcgagcaaacaaaaact
gcattcctcctaaagatcaacgattacctcgccaaaaacacaaactacaagtcctacttg
gaggaagatcgcacttctgttccttacaacaccaaaatcaaagttctacgcgtgctctcg
ccagatggctacggattcagcttccgagttttgaccgagcgtgacgaagtactatacctt
cgtgctatcgagaacgctcccgaaaagcaacgcaagaccgtcgcagacatttatttggca
tttaatcagaagtatatgggctccgtcaagcatcaccgggccattgcttctctaagcact
tatttcccattttattctgccaccgtgcgtctttttaagcgctggcttgacgctcagctt
cttctgtcccatttcaatgacgagcttgtggagcttctggtgatgaaggtgtttgtggac
cctgctccatactctgttcctgccagcgtcgaggctggcttccttcgcaccttacaattc
ttgagccaatggaattggaaggaggatccacttgttcttgatcttgcaaaagaccttgag
aaaagtggaaactacattgatctcgtctcagaaaaattgactgtccagacttatcagtca
attaccggaaacttcagcaaactgcgcaaggaggatccacaggctatcaagacacagcta
tttgttgcatctaaagaggacccatctggaaaattgtggtcgtttgggctttctctacct
attgcgacaagactgactgctctcagtaaggctgccgtggccgctgttagcaagacgctt
aaccagaaaactttgaaactaatattcactccggcgttgaaagattatgatatcgtgcta
aagatcagaacgcctgctgagcttgcctcaaagtctggtatcttgccagaaaacaaattc
aaaaatctggtggccacgtcgttggtggcctccgatgacgtttcttccgaacaggaccct
gttcctgcgttctgtgacgagttgagggctcgtttcagtaacgtgatgctcatctcgtgc
gggaagtacaccggactcgggaaagaaggccgttgcaacgttatcgcggggatactgaac
ccagtgataggcaactccaagaagaagttccgggtcaacgttggctacgatgtcgagcct
accgatgatgagcagctcaagcttaataaacattctctgctcagtcaaattgcgctcttg
ggtggtgatttgattgagtctgtagacttaaataggtgggaataa
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