Ogataea parapolymorpha: HPODL_01204
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Entry
HPODL_01204 CDS
T08137
Name
(RefSeq) Replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
opa
Ogataea parapolymorpha
Pathway
opa03030
DNA replication
opa03410
Base excision repair
opa03420
Nucleotide excision repair
opa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPODL_01204
03410 Base excision repair
HPODL_01204
03420 Nucleotide excision repair
HPODL_01204
03430 Mismatch repair
HPODL_01204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
opa03032
]
HPODL_01204
03400 DNA repair and recombination proteins [BR:
opa03400
]
HPODL_01204
DNA replication proteins [BR:
opa03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
HPODL_01204
DNA repair and recombination proteins [BR:
opa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
HPODL_01204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
Rad17
AAA_22
RuvB_N
AAA_16
nSTAND3
AAA_17
RNA_helicase
AAA_14
AAA_33
AAA_28
AAA_18
NTPase_1
AAA_assoc_2
AAA_24
5_3_exonuc
TIP49
Gp44_lid
NACHT
TSP_Ig-like
BRCT_2
Motif
Other DBs
NCBI-GeneID:
25770668
NCBI-ProteinID:
XP_013933179
UniProt:
W1Q9P6
LinkDB
All DBs
Position
VI:complement(190469..193083)
Genome browser
AA seq
858 aa
AA seq
DB search
MVRIDQFFGKAAVQKNKGKKATHDSSSSPRKPKSQETSQHFKSKQSADSNIILVDSEEDE
IVTPQRKRKAELTESDNEEPVKKEAKVLPKKSPTKTKSTKPQAGRSSQPSQPGAGQTAQE
ILETIPDADPKYLEVDPEMENMNFFQLKARTSEAPAPTGDRMLPEGRPNCLNGLTIVFTG
ILPTIDRDECVRIASKYGAKVTKSISGKTSLVVIGHEAGPKKIKMIKEKKIKCIDEEGFI
QLLQKMPADGGSGEAAQIAKAKKEEEERKAIEEAEKEEEENRKRQTQLKQERAGQFSQPE
RPSDKPDTEKLWTVKYAPTDIKQICGNKGNVELLQSWLEHWFDNAKTGFKGPGIHGYRAV
MISGPPGIGKTTAAHIVAKSLGFDVIEKNASDVRSKKLLNEQLRSSLSNSSVVGYFNQLK
THDPNNRRIVMIMDEVDGMSSGDHGGGAQLSQFCRTTETPLILICNDKSLPKMRTFDKTC
YDLTWRRPTGKEMKSRLMTIAHREGLKLDPNIIDQLVAATNNDIRQIINIMSTVARTQKT
LNYENSEQISKTWQKEVILKPFDIVGKLLSGASYGSHARYNLSEKINLYFNDMDFTPLMI
HENYRSTTPSKLSGCPANKRNLRHLELLEEASNYISESDLVNQLIRGGEQQWSLAPFHAV
LSSVLPGSKVAGGMNGRTMFTSWLGQNSKKMKYDRILQDLQYHSSTKTMTNTQELRLTYI
PFLIKMLSDPLIKNGTSGIDQVLELMDEYYLTKEDWDNLMEFGVGPKGRMDQKLKSVSSA
TKSAFTRKYNSYSHPTVIYKTGDSVTKGNRAPAPKPDLDDVIEDDTKDVPDDEPQEEQDD
IKNDKLIKQVKQRTKRRK
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atggttcgcattgaccagttttttggcaaggcggccgttcaaaagaacaagggcaagaaa
gctacgcacgattctagctcctcgccgagaaagccaaaaagtcaagaaacgtcccagcat
ttcaaatcaaagcaatctgctgattcgaacatcattctggtagattctgaagaggatgaa
atagtgacaccccaaagaaagcggaaggcagaattgactgaaagcgacaacgaggagcct
gtcaagaaggaggccaaagtcttgcccaaaaaaagtccaactaaaaccaagagcaccaag
ccgcaggccggtcgatccagccaacccagccaacctggcgccggacaaacagcacaggaa
attctggagacgattcccgatgccgatccaaaatacctagaggttgatcctgagatggag
aacatgaattttttccaattgaaggcgcgcacatcggaggctcccgcaccaacaggagac
aggatgcttcctgaagggcgcccaaactgtctcaacggattgaccattgtattcacaggt
attcttccaaccattgatagggatgaatgtgtgcggatagcttccaaatatggagcaaaa
gtgacaaagtccatcagtgggaagacaagcctggtagtgattggtcacgaggcaggtccc
aagaaaattaagatgatcaaggagaagaagatcaaatgcatagatgaggaagggttcatt
caacttcttcagaaaatgcctgcagatggtggcagcggagaggcggctcagatcgccaaa
gctaaaaaagaggaggaagaaaggaaggccattgaggaagcagaaaaagaagaggaagag
aataggaaacgacaaactcaattgaagcaagaacgggctggccagtttagccaaccggag
aggcctagtgataaaccggacacggaaaaactatggacggtgaagtacgctccgacagat
atcaagcaaatttgtggaaacaagggaaacgtggaattattgcagagctggttggaacac
tggttcgacaacgcaaagaccggtttcaagggtcctggcatacatggttaccgtgcggtt
atgataagcggacctccgggaatcggcaaaaccactgctgctcacatcgtggcaaaatcc
cttggatttgatgtgatagagaaaaatgcttctgacgtgcgatccaagaaattgctgaat
gagcagttgcggtcgtcactgagcaactcatctgtggttgggtacttcaaccagctcaaa
acgcatgacccaaataatcggagaatagtgatgatcatggacgaggtcgacggtatgtcc
agcggagaccatggaggtggagctcagctttcgcaattctgccgtacaaccgagacaccc
ctgattttaatttgcaacgacaaatcgctgccgaagatgaggactttcgataaaacctgc
tacgatctcacgtggagaagacccactggaaaggagatgaaatcccggcttatgacaatt
gcccaccgagagggattgaagctggatcctaatatcatcgatcaattggtggctgccacg
aacaacgatattagacaaattatcaatataatgtcaactgttgcacgtacgcaaaaaaca
ctcaactacgagaacagcgaacagatctccaagacctggcaaaaggaggtgatattaaag
ccgttcgatatagttggcaaacttttgagcggcgctagctatggatctcatgccagatac
aatctgtcagaaaagatcaatctttatttcaacgacatggacttcacaccgctgatgata
cacgagaattacaggtccaccacaccatcgaaactgagcggatgccctgcaaacaagcgg
aatcttcggcatttggagctgctagaagaagcctcgaattatatttcggagtcagatctg
gtcaatcagctgatcagaggaggcgaacaacagtggtcattggctccctttcatgctgta
ctttccagtgtgcttccaggctccaaggttgccggtggaatgaacgggcgtaccatgttc
acctcgtggcttggccagaactccaagaaaatgaagtacgatagaattctacaagattta
caataccactcatctacgaagacaatgacaaacactcaggagctgaggctaacttacatt
ccattcctgattaaaatgctatcggatccattgattaaaaatggaaccagcggtatcgat
caggttttggagctgatggacgagtattatctcacgaaagaagactgggacaatctgatg
gaatttggtgttggaccaaagggcagaatggatcaaaaactaaagtctgtgagctctgct
accaaatcggcattcacccgaaaatacaactcttattcgcatcctactgtgatctacaag
actggagattctgttactaaaggaaaccgagctccagctcccaaacctgatcttgatgat
gttatcgaggatgatacaaaagatgtgccagacgacgagccgcaggaagaacaagacgac
attaagaacgataaacttatcaagcaggtgaagcaacgcacaaagaggcgcaagtaa
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