Ogataea parapolymorpha: HPODL_01305
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Entry
HPODL_01305 CDS
T08137
Name
(RefSeq) DNA excision repair protein ERCC-8
KO
K10570
DNA excision repair protein ERCC-8
Organism
opa
Ogataea parapolymorpha
Pathway
opa03420
Nucleotide excision repair
opa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
HPODL_01305
09124 Replication and repair
03420 Nucleotide excision repair
HPODL_01305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
opa04121
]
HPODL_01305
03400 DNA repair and recombination proteins [BR:
opa03400
]
HPODL_01305
Ubiquitin system [BR:
opa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
HPODL_01305
DNA repair and recombination proteins [BR:
opa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
HPODL_01305
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR5
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_IFT122_1st
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
DSE1_N
Beta-prop_RIG_2nd
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_1st
WDR55
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_EIPR1
Beta-prop_TEP1_C
EIF3I
Beta-prop_EML
Beta-prop_CAF1B_HIR1
PAC11
TRM82_WD
Beta-prop_NOL10_N
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_2nd
Beta-prop_Aladin
Beta-prop_DCAF12
DNAI3_WD
CFAP251_N
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
25770768
NCBI-ProteinID:
XP_013933286
UniProt:
W1Q8S3
LinkDB
All DBs
Position
VI:complement(<364702..>366030)
Genome browser
AA seq
442 aa
AA seq
DB search
MHQLLFEHAITKFNHSPLDVLKVYNEYKYSRLDNLDAMKGHFPMKPHQASVNTLSLDPLY
NRYLFSGGGESSVKLWDLKQQVEVEELEPIYILPSKSVHKFGITHIKWWSDNGLWLSSSF
DHTLSVWDANEMQHVHSFNLGSRVLHFDFEDHGRNSLVAVCADGGVGGLRLLDLRTLADA
HTLGGGGKLQGGFGYMLSCRWSPANPNLVVGGSQDGYCIGWDIRRADGCVFKMDYNLTTT
NYKTNTRQLLLHESTPKAHNGGINSLLFTDDGAELITLGHDDKICVWDMTSAEKPLNKQI
NFGPLVRNKSTQHISMALSPLSETELQYLWFPSENGEILIYRLEDGKLVARLNKNGSTLN
RRTTSIVYAKESSIKYYSGCKDGTISVWGYNSLLDSQKSGDGLDFDNGNLGTLACETENS
DILDRIHDEIEANKIRAKNTEF
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgcatcagttactcttcgagcatgcgataaccaaattcaaccactctccgttagatgtc
ctcaaagtttacaatgaatacaaatactcaagattggacaacttggatgcgatgaaaggt
catttcccgatgaaacctcaccaagcctctgtcaataccttatccttagaccctttgtac
aaccgatatttattttccggaggaggtgaatcttctgtcaagctgtgggatcttaagcag
caggttgaagtagaagagttggaacctatttatattcttccctctaagtctgtgcataaa
tttggtattactcatattaaatggtggtccgataacgggttatggctgtcgtcctccttc
gatcatacattaagtgtttgggatgcgaatgaaatgcagcatgttcattccttcaatctt
ggttccagagtgctccattttgattttgaagaccatgggcgcaattctttggtagctgtt
tgcgcggatgggggagtcggaggtctcaggctgctggatttgaggaccctagcagatgct
catacactaggaggtggaggaaaacttcaaggagggtttggatatatgttgagttgtcgg
tggtcacccgcaaaccctaaccttgtggttggtggcagccaagatggttattgtataggg
tgggatatacgacgtgccgatggttgtgttttcaaaatggactataacctaacgaccact
aactataaaaccaataccagacagttactgctacacgaaagtactccaaaagcgcacaat
ggtggaataaactcgttgctttttacggatgatggggcggaacttattacccttggacat
gatgataaaatatgtgtttgggatatgaccagtgcagaaaagcctctgaacaagcagatc
aattttggccccctggtcagaaacaaatccacacaacacatcagcatggctttaagtcct
ctgagcgaaacagagctacagtacttatggttcccgtcagagaacggtgaaatcctgatt
taccgacttgaggacggcaaacttgttgccagactaaataagaatgggagtactttgaac
agaaggacaacaagcatcgtatatgctaaagagagctcgatcaagtactacagtggatgc
aaggatgggactatatctgtgtggggctataattctttgttggatagtcaaaaatctgga
gatggactggattttgataatggcaatcttgggaccctagcgtgcgagaccgagaattct
gatattcttgacaggattcatgatgagattgaagctaataagattcgcgcaaaaaacacg
gagttttga
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