Ogataea parapolymorpha: HPODL_01421
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Entry
HPODL_01421 CDS
T08137
Name
(RefSeq) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
opa
Ogataea parapolymorpha
Pathway
opa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HPODL_01421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
opa03041
]
HPODL_01421
03009 Ribosome biogenesis [BR:
opa03009
]
HPODL_01421
Enzymes [BR:
opa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HPODL_01421
Spliceosome [BR:
opa03041
]
Complex A
U2 snRNP components
U2 related factors
HPODL_01421
Complex B
HPODL_01421
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
HPODL_01421
Ribosome biogenesis [BR:
opa03009
]
Eukaryotic type
90S particles
Helicases
HPODL_01421
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
HA2_N
AAA_22
SRP54
AAA_19
Flavi_DEAD
ResIII
AAA_23
AAA_30
T2SSE
Motif
Other DBs
NCBI-GeneID:
25770884
NCBI-ProteinID:
XP_013933406
UniProt:
W1Q936
LinkDB
All DBs
Position
VI:545852..548116
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AA seq
754 aa
AA seq
DB search
MGESSRPKKRSKITETSIPQIAAEKAEHELAIHPHMREKEELEVYNGGEFDISKRNKTTA
KFAKKLEDGEKNPFTGKPFSQKYFDILKVRRELPVHAQRDEFLKIFHKTQIMVFVGETGS
GKTTQIPQFVLYDEMPHLRGTQVACTQPRRVAAMSVAARVADEMDVTLGEEVGYSIRFEN
KTSKKTILKYMTDGMLLREAMEDHDLKRYGCIILDEAHERTLATDILMGLLKHVSVRRPD
LKIIIMSATLDAEKFQSYFNDAPLLAVPGRTYPVEIYYTPEFQRDYLDAAIRTVLQIHAT
EDEGDILLFLTGEEEIEDACSKISLEGDHLIREEGCGPLSVYPLYGSLPPHQQQKIFEPA
PQPFKPGGKPGRKVIVSTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISK
ASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRTNLSSTVLELKKLGIDDLV
HFDFMDPPAPETMMRALEELNYLGCLDDAGDLTALGRLASQFPLDPMLAVMLIGSPEFKC
SEDILTIVAMLSVPSVFVRPSGKSAKAAAEEAKKVFAHPYGDHLTLLNVYNAFKSEEAQE
IGISKWCKNNFLSYRSLKSAENVRWQLSKLMEKYDLELNYTDYDNPKHHLRLRKALVAGF
FMQVAKKKSAGKGYITVKDNQEVLIHPSTVLGQQDEWLIYNEFVLTSKNYIRTVTAIKPE
WLIELAPKYYNLDHFQKGDVKLSLERVKARVDRK
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgggggaatcatcaagacctaagaagcgctccaagataactgagacgtcgattcctcag
atagctgcagaaaaagcagagcacgaacttgctattcatcctcatatgagggaaaaagaa
gagcttgaagtctataatggaggtgaatttgacatttctaaacgtaataagactacagct
aaattcgccaagaaacttgaagatggtgagaagaacccgttcacaggtaagcctttttcg
caaaaatactttgacatcctgaaagttcgtcgagaattaccagttcacgctcaaagagac
gagtttctgaagatttttcataaaactcagatcatggtttttgttggtgagacaggttcc
ggtaaaaccacacaaatccctcaatttgtgctttatgacgagatgccgcatttgagaggc
acccaagttgcatgtacacaacctagaagagttgcagctatgtcggtggcagccagagtg
gcagatgaaatggatgtgactctaggagaagaagttggttacagcatcagattcgaaaac
aaaacatcgaagaagacaatcctgaagtacatgaccgatggtatgcttctcagagaggcg
atggaggatcacgatttgaagagatatggatgcataattttggatgaagcgcatgaacgt
acgcttgcaactgatattctcatgggacttttgaaacatgtcagcgttagaagaccagac
ctaaaaataatcatcatgtctgccactctggatgccgaaaaattccagagctacttcaac
gatgctccattgctggcagttcctggtcgtacttatcccgttgaaatttattacactcct
gaattccagagagattacctggatgctgctatccgtacggtcttgcaaattcatgccact
gaagatgaaggtgacatattgctgtttttgacaggtgaagaggaaattgaagatgcatgc
tcgaaaatatctttggagggtgatcacttgatcagggaagaggggtgtgggccgctttct
gtctacccgctgtatggttcactgccccctcatcagcagcagaagatttttgaaccagcc
ccacagccatttaaaccaggtggaaaaccaggaagaaaagtcattgtgtccaccaatatt
gcggagacttccctgacgattgatggtattgtgtatgtggttgatccaggattttcgaag
caaaaggtttataacccaagaataagggtggagtcgcttttggtttcacccatctccaaa
gcctcggcgcaacaaagagcaggaagagctggtcgtacgcgtcctggaaaatgttttcgt
ttatacacagaagaggcctttcagaaagagcttatagagcagagctacccggaaattttg
agaaccaacttgtcttccaccgtgttggaacttaaaaaactaggcattgatgatcttgtg
cattttgatttcatggacccccctgctccagaaactatgatgagagctttggaagaactc
aattatctgggatgtttagatgatgccggagacctcactgcactgggacgattggcatcg
cagtttccactggatccgatgttggctgttatgctgatcggttctcccgagttcaagtgc
tcggaggacatcctgacgattgttgctatgttgtcggttccttctgtttttgttcgtcca
tcaggaaagtcagctaaggctgcagctgaggaggccaagaaggtgtttgctcatccttat
ggagatcatctgacacttttgaatgtttacaacgctttcaaatcggaagaagcacaagaa
attggcattagcaagtggtgtaagaacaatttcctgtcttaccgatctctcaaatccgcc
gaaaatgtgagatggcagctctcaaagttgatggagaaatacgatttggagcttaattac
accgattacgataatccaaaacaccatttaaggctgcgcaaggcattggttgctgggttt
ttcatgcaagtcgccaagaagaagagcgcaggaaaaggttacatcaccgtgaaagataat
caagaagtgctgattcatccatcgaccgttcttgggcaacaagatgaatggttgatctat
aacgaatttgttctgacgtccaagaactatattcgtacagttactgcgatcaagccagaa
tggctaatagagttggctccaaaatactacaatcttgaccatttccagaaaggagacgtc
aaattaagtctcgagagggttaaagcgcgcgtggacagaaaatag
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