Ogataea parapolymorpha: HPODL_01522
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Entry
HPODL_01522 CDS
T08137
Name
(RefSeq) transcription initiation factor TFIIF beta subunit
KO
K03139
transcription initiation factor TFIIF subunit beta [EC:5.6.2.-]
Organism
opa
Ogataea parapolymorpha
Pathway
opa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HPODL_01522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opa03021
]
HPODL_01522
Transcription machinery [BR:
opa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
HPODL_01522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_beta_N
TFIIF_beta
Bact_surface_Ig-like
Motif
Other DBs
NCBI-GeneID:
25770983
NCBI-ProteinID:
XP_013933508
UniProt:
W1QAQ1
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All DBs
Position
VI:720355..721575
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AA seq
406 aa
AA seq
DB search
MSAISPPKAAGRPAEPDQSFQDVAYDEDDMPIPDGIAEVNDKQLEESGESLNLDMSKANN
QVWLVKLPPALSEVWKNERMLDGRQLGNIKIQQGVSPAKIMLELNEKLQEHKNIDKEYEL
KMIKHVVENEYVFSEAELSQFKSQAETRTEMVQMPDQPTLNPLDGEEPEESNPWSTAKVP
QRASYIPEARGRGYEEENFEEPKKVVPFAKTIPKKTALVGKIVHECQVIPTKLSTNNKLK
LLEQKRRLAQMTKRKTITYMKDANAGVLQGRTGPNLQTGSTIQLSRELAARKEQQRLEGR
ASRMDREHLMKVLFNLFNEYDYWTLKGIREKTNQPEAYLKDCLENIAVMERKGTYALKYR
LKDEYKKSREVERKEKQGFGDLEADNRNENDDDGDEDDDIEMEDVA
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcaatttctccgccaaaggctgccggtcgacctgccgagccagatcagtcattc
caagatgtggcgtatgatgaggacgacatgcccattcctgatggaattgcagaggtgaac
gataagcagctggaagaaagcggtgagtctcttaatttggacatgtccaaggcgaataat
caggtctggcttgtcaagcttcccccagctctctctgaggtgtggaaaaacgagagaatg
ttggatggacggcagctgggcaatataaagattcaacagggagtctcaccagccaaaatc
atgcttgagctaaatgagaaacttcaagaacacaaaaatattgataaagaatatgaactc
aagatgatcaagcatgtggtggagaatgagtatgtgttcagcgaggccgagctaagtcag
ttcaaaagccaagcggagactagaactgagatggtccagatgccagatcagcctacatta
aatcccctagacggtgaagagccggaggaatcgaatccatggtccactgctaaggttccc
caacgtgcatcatacattcctgaggcacgtggacgtggttacgaggaagaaaacttcgaa
gagccaaagaaggtggttccatttgccaaaacaattcccaagaagactgctcttgttgga
aaaatcgttcacgagtgtcaggtcatccctacaaaattatccacaaacaacaagctaaag
ctattggagcagaaacggagactagcacagatgacaaagagaaagaccattacgtacatg
aaggatgccaacgccggtgttttgcaaggaagaacgggaccaaatctgcaaacaggctcg
accatccagctatcaagggagcttgctgctaggaaggagcaacagcggttggaaggccgt
gcttctcgtatggacagagagcacttgatgaaggtcctgttcaatctcttcaacgagtac
gattactggacgttgaaaggtatccgagaaaaaacaaatcagccagaagcttacttgaag
gactgtttggagaacattgcggtgatggagcgcaaaggaacctatgctttgaaatacaga
ttaaaagacgagtacaagaagagcagagaggtggaaagaaaggagaagcaaggatttgga
gatttagaggcagacaacagaaacgaaaacgatgacgatggtgacgaagacgatgatatt
gaaatggaggacgttgcttga
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