Ogataea parapolymorpha: HPODL_01646
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Entry
HPODL_01646 CDS
T08137
Name
(RefSeq) RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
opa
Ogataea parapolymorpha
Pathway
opa03022
Basal transcription factors
opa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HPODL_01646
09124 Replication and repair
03420 Nucleotide excision repair
HPODL_01646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opa03021
]
HPODL_01646
03400 DNA repair and recombination proteins [BR:
opa03400
]
HPODL_01646
Transcription machinery [BR:
opa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
HPODL_01646
DNA repair and recombination proteins [BR:
opa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
HPODL_01646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
QTMAN_N
APG12
Rad50_zn_hook
Motif
Other DBs
NCBI-GeneID:
25771105
NCBI-ProteinID:
XP_013933634
UniProt:
W1QAX8
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Position
VI:complement(905030..906055)
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AA seq
341 aa
AA seq
DB search
MDAIADRAFAESQTNPHKLVDETPSLLAVVVDINPLEWRKLEKDRSVSLKQVVSSIIVML
NSHLSLNSSNHVALYLANSYSHGAQLIYPLTESSTSTRFLHTPGMYRQFRFIDGSIVDKI
EHLLNEQPDTLSQLIGREQGKQHIKGTLAGAMSMALCHINKIQQSDELNALKSRLLVVSI
SDDSTLPYVSVMNTIFASQKMKISVDVCKLGPSSTFLQQAADATNGVYIYITQPEGLIQY
LTTALFIDPMLRPIIVLPTDESIDFRASCFITNKVIDVGYVCSVCLCILSVIPEDEKCPT
CHSKFDHNLITKLKRKPKVLPLKKKDRELGDKNGTATPESA
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atggacgctattgcagatagggcatttgcagaatcgcagacaaacccgcataaattagtg
gacgagacgccgtcactactggcggtggtggtcgatatcaacccgttggaatggcgcaaa
cttgaaaaagatcgatcagtctcgctcaagcaagtggtttcctccataatagttatgctc
aattcgcatctttccctcaacagctcaaaccacgttgcactgtatcttgcaaatagttat
tcccatggggctcaactcatatacccgcttacagagtcttcgacgtctaccagatttttg
cacactcctggaatgtacaggcagtttcgatttatagacggctcaattgtggacaaaatt
gagcacttgctaaatgagcagccagacacgctttcccagctgattggcagggaacaagga
aaacagcatatcaaaggaacgctcgcaggagcgatgtcgatggccctctgtcatatcaac
aaaattcagcaatctgacgagctgaacgcattgaaatcacggctcttagtggtgagcatc
agtgacgacagcacactgccgtacgtttcagtaatgaataccatatttgcgtcccaaaaa
atgaagatttcggtggacgtttgcaaactaggaccaagctcaactttccttcaacaagca
gcagatgccaccaacggagtctacatttatattacacagccggaaggccttatacaatat
ctcacaacagcattgtttattgatccaatgttacgaccgatcattgttctccctactgac
gagtcgatagatttccgcgcttcgtgtttcataaccaacaaagttatcgacgtgggctac
gtttgctccgtgtgtctttgtattttaagtgtcattccggaggacgagaaatgccctacg
tgtcattccaaattcgaccacaacctaattaccaaactgaagagaaagcccaaagttttg
cctctcaagaaaaaagatagggagttgggagataagaacgggacagcaacaccagagtct
gcctga
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