KEGG   Ogataea parapolymorpha: HPODL_01828
Entry
HPODL_01828       CDS       T08137                                 
Name
(RefSeq) Histone deacetylase RPD3
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
opa  Ogataea parapolymorpha
Pathway
opa03082  ATP-dependent chromatin remodeling
opa03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:opa00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    HPODL_01828
   03083 Polycomb repressive complex
    HPODL_01828
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:opa03036]
    HPODL_01828
Enzymes [BR:opa01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     HPODL_01828
Chromosome and associated proteins [BR:opa03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     HPODL_01828
   HDAC complexes
    Sin3A-HDAC complex
     HPODL_01828
    BRAF-HDAC complex
     HPODL_01828
    REST complex
     HPODL_01828
    SHIP complex
     HPODL_01828
    MiDAC complex
     HPODL_01828
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     HPODL_01828
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    HPODL_01828
  Chromatin remodeling factors
   NuRD complex
    HPODL_01828
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 25771284
NCBI-ProteinID: XP_013933827
UniProt: W1QDG6
LinkDB
Position
VI:1230703..1232232
AA seq 509 aa
MIFELKPFDELKVGTSSKKRVAYFYDSDVGNYAYGAGHPMKPHRIRMAHSLIMNYGLYKK
MEIYRAKPATKQEMCQFHTDEYIDFLARATPDNLEMFTKEQAKFNVGDDCPVFDGLFEYC
GISGGGSMEGAARLNRGKCDIAINYAGGLHHAKKSEASGFCYVNDIVLGIIELLRYHPRV
LYIDIDVHHGDGVEEAFYTTDRVMTCSFHKYGEFFPGTGELRDIGVGKGKYHAVNIPLRD
GIDDATYKSIFEPVIQRIMDWYQPSAVVLQCGGDSLSGDKLGCFNLSMRGHANCVNFVKS
FNVPTMVVGGGGYTMRNVARTWAFETGLLNETLLDAELPFNDYYEYFGPDYKLDVRPSNM
HNANSPEYLNRILTQVFANLENTKHAPSVQMQEVPPDLVDFDDDPEEDTKEAIDTRGGSQ
KAHDERIVPENEFYDKDEDAVRAKDSTDYNEAEKKPTPSIIPASYYNEVAEDMVRELERD
EKNENKEESNEATITPASNGNGNYLKENN
NT seq 1530 nt   +upstreamnt  +downstreamnt
atgatctttgagctaaaaccttttgacgagctgaaagtgggcactagcagcaagaagcgg
gttgcatacttttatgactccgacgtgggcaactacgcctacggtgctggacacccaatg
aagccacacagaataaggatggcgcactcactgatcatgaactacggattgtataaaaag
atggagatctatcgggccaaaccggccactaagcaggagatgtgtcaatttcacaccgac
gagtacattgacttcctcgccagagccactccagacaacctagagatgtttaccaaagaa
caagccaagtttaacgtgggagacgactgtcctgtcttcgacggactttttgagtactgt
ggtatttctggaggaggatcgatggaaggagccgctagattaaatagaggaaagtgcgac
attgccatcaactacgctggaggtttgcaccacgccaagaaatccgaggcttcgggtttc
tgttatgtgaacgacattgtcttgggcatcatcgagctgctcagataccatccacgtgtg
ctgtatattgatatcgatgtgcaccatggtgacggcgttgaggaagctttctacaccacg
gatcgtgttatgacatgctcgttccacaagtacggagaatttttcccaggtactggtgag
ctcagagacattggtgtgggcaagggaaaataccacgctgtgaacattcctcttagagat
ggtatcgacgatgccacctacaagtcgattttcgagcccgttatccagagaatcatggac
tggtatcagccttctgctgttgttctccagtgtggtggagactcgctttccggagacaag
cttggttgtttcaatctttctatgcgcggacacgccaactgcgtgaactttgtcaagtcg
ttcaacgtgccgacgatggttgtgggtggcggtggatacacgatgaggaatgtggcgaga
acatgggctttcgaaaccggtttgctgaacgagacattgttggacgccgagttgcccttc
aacgactactacgaatatttcggacctgattacaagctggacgtgagaccatccaacatg
cacaatgccaactctccagagtatctgaacagaatcctgactcaagtttttgccaatctc
gaaaacacaaagcatgctccttcggttcaaatgcaagaggttccaccagaccttgtggac
tttgacgacgatcctgaggaggacactaaggaggccatcgacaccagaggtggctctcaa
aaagcgcacgacgagcgaatcgttcccgaaaacgagttctatgataaggacgaggatgcg
gttagagcaaaagactcaactgactacaacgaggccgagaagaagccaactccttcgatc
atacccgctagttactacaatgaggttgcagaggatatggtgcgggagctggaacgcgac
gaaaagaacgagaacaaggaagaatccaacgaagctactataacgcccgcatccaacgga
aacggcaactatctgaaagagaataactag

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