Ogataea parapolymorpha: HPODL_02182
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Entry
HPODL_02182 CDS
T08137
Name
(RefSeq) U3 small nucleolar RNA-associated protein 13
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
opa
Ogataea parapolymorpha
Pathway
opa03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
HPODL_02182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
opa03009
]
HPODL_02182
Ribosome biogenesis [BR:
opa03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
HPODL_02182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
Utp13
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_HPS5
Beta-prop_WDR75_2nd
Beta-prop_RIG_2nd
Beta-prop_NUP159_NUP214
WD40_like
Beta-prop_NWD2_C
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
Beta-prop_WDR11_2nd
VPS8_N
Cytochrom_D1
Beta-prop_RIG_1st
Beta-prop_DCAF12
DUF5074
Beta-prop_NOL10_N
Utp12
Motif
Other DBs
NCBI-GeneID:
25771637
NCBI-ProteinID:
XP_013937278
UniProt:
W1QJQ5
LinkDB
All DBs
Position
I:complement(619780..622143)
Genome browser
AA seq
787 aa
AA seq
DB search
MDFTTKRSYKKVDIEPFYIGSANATVSGDGVVLATAVLEDIVVINRETDDVVHQIQGDGD
LVTTLQLTPDGKYLAIVSQSQQLKVFDLQQSKFIKTFKLPAASYISTVDPTSSLFAFGLT
DGSVIVWDIEGSFITHNFKGHPSTVSSLRFYGKLDSKDWKLASGDIMGTVKIWDLVKRKC
ARTMKEHTATVRGVSFSDNGELFISSGRDSVIIVYNTRTWKEVKTIPVSHSVEACGFVEH
EDKELLYTAGEFGLLKVWDLNSEKLVATSRKPLETTEELNIMDVLHLDKGIDSLLLVYSD
QTIAEIDLDAQDGIFPTLRVMAGNHGTIADMRYVGPKFDQLALATNSPALRIVDVAEKPL
DVTLCEAHTDLLNALDSTADGLWLATAAKDNTARLWRYDEEQKFVCVAVFEGHISSVTAV
ALPRTPVRDYPRFLITAAEDLTIKKWTIPKPGDEVIHVRKSDYTRRAHDKMIHSIDVSPN
DDFLATASHDKMAKIWDLEAGETVGVLKGHKRPVYDISFCAYDRLIVTGSGDQTAKVWSL
EDLTCIKTFQGPANAIQRVAFLARNQFIVGAGADGLIKIWEISSGDCVQTLDNHDNRIWA
LCIKDDGREFVSADADGAITIWIDNTEEVQQLEAEERKLKVEQEQSLQNYINKKDWVNAF
KLALTLNHPMRLYNVLLASIAEGDEGSVIGSFGIESVISELEQDQILLLFKRVRDWNTNS
RHFEVAQKLIKAILTNYSNEKLFEMPGLMGYIDAILPYSERHYGRLDDLVEQSFILDYVV
QQMDKVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atggacttcaccacaaaaaggagctataaaaaggtcgatatcgagcctttttacattggt
tctgctaatgcaacagtttccggagatggtgtggttctagcaactgcagttctggaagat
atagttgttatcaacagagaaacagatgatgttgtgcaccagatccagggagacggagat
ctggtgacgacgttgcaactaacaccggacggcaaatatctggccatagtatctcaatca
cagcaactcaaggtttttgatctccagcaaagcaaattcatcaagactttcaaacttccg
gcagcatcatatatctctaccgtggaccctacttcgtctttatttgcattcggacttacc
gatggtagtgtcattgtctgggatatagaggggtcattcatcacacacaacttcaaaggc
catccatcgacagtttcttctcttcgtttttatggaaaactcgactctaaagattggaag
ctggccagtggagatatcatggggacagtgaaaatatgggacctggtgaaacgcaaatgt
gcccgcacgatgaaagagcatacggctaccgtgagaggtgtctcgttcagtgacaacggt
gagctgtttataagcagtggaagagacagcgtgataatagtgtacaataccaggacgtgg
aaggaggtgaagacaattcccgtctcgcactctgttgaggcgtgtggatttgttgaacat
gaagacaaagaacttttgtatacggcgggcgagtttggtcttctgaaggtctgggacttg
aattctgaaaaactggttgcaaccagcaggaagccactggaaaccacagaagagctcaat
attatggacgttttgcatcttgacaaaggaatagactctttgctgctggtttattcagat
cagacaattgcggagattgatctcgatgcacaagatggcatattcccaactttgagggtg
atggcgggtaatcatggtaccatcgctgacatgcgctatgttggtcctaaatttgaccag
cttgcattggcaacgaactcgcctgctttgcgaattgtcgacgttgcggaaaagccgctc
gatgtcacgctgtgcgaagcgcacaccgatttgttgaatgctctggattccaccgccgat
ggcctctggctggctaccgctgctaaggacaatacggcacggctctggaggtacgacgag
gaacaaaaattcgtgtgtgttgccgtgtttgaaggccacatctcgtcggtcactgctgtt
gcgttgcctaggacacccgtcagggattatcctcgcttcctcataacagcagctgaagac
ctgacaataaaaaaatggacgattcctaaaccaggagacgaggtgatacatgtgagaaag
tccgactacacaagaagagcgcacgacaagatgatccattccattgacgttagtccgaac
gacgattttttggcgaccgcgagccacgacaaaatggccaaaatctgggacttagaggct
ggcgagactgttggagttttgaagggccacaagcggccagtttacgacatcagtttctgt
gcctacgacagactaattgtgactggttctggtgaccagacagccaaggtgtggtcatta
gaggaccttacgtgtatcaagactttccagggtccggctaatgctattcagcgagttgcg
tttctagccagaaatcagtttattgtcggagccggtgcagacggtttaatcaagatctgg
gaaatctccagcggcgattgcgtacagacgctcgacaaccacgacaataggatctgggcg
ctgtgtatcaaagacgacggccgcgagtttgtgtctgctgatgccgacggagcaatcacc
atatggatagacaacaccgaggaggtgcaacagctggaagcagaggagcgcaaattgaag
gtcgagcaggaacagtcgttgcagaactacatcaacaaaaaagactgggtgaacgcgttc
aagctggctttgactctgaaccaccctatgagactctataacgttcttctggccagtata
gcagagggcgacgaagggtctgtaattggatcctttggcatcgagagtgtgatttcagag
ctggaacaggaccagatattgctactcttcaaaagagtccgggactggaacaccaattcg
cgccatttcgaggtggcacagaagctcatcaaggcgatattgacaaactactccaacgag
aagctgtttgagatgcctgggttgatggggtacattgacgccattttgccatacagcgag
agacattatggcaggttggacgacctggtcgagcaaagtttcattttggactatgttgtt
cagcagatggacaaggtggtgtaa
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