Ogataea parapolymorpha: HPODL_02258
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Entry
HPODL_02258 CDS
T08137
Name
(RefSeq) NAN1 U3 snoRNP protein
KO
K14552
NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
Organism
opa
Ogataea parapolymorpha
Pathway
opa03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
HPODL_02258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
opa03009
]
HPODL_02258
Ribosome biogenesis [BR:
opa03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
HPODL_02258
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR75_1st
Beta-prop_WDR75_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WD40
WDR55
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_SPT8
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
EIF3I
eIF2A
Beta-prop_IFT122_1st
Motif
Other DBs
NCBI-GeneID:
25771712
NCBI-ProteinID:
XP_013937356
UniProt:
W1QKV6
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Position
I:734900..737260
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AA seq
786 aa
AA seq
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MVLSDWNLNFGAGGRLLGRAQLVSADSKFAIVPFKSQIKVYSLATRQSVRSIRLDLDLSL
VVDAAFSTQDPNLLYLFTRTNTMVVVNWREKLASPVVATYTLQLPAEIVRFVRFGASENE
FYFIIGKSTTKNQPHSRTLLKSTIDSQTQEISTLKNVVLFAMSVDRSTLAYLTNKNQLYF
QSGDGPLEMIQFAYKTPITSLAVSNAQTPMIALGTSSGIIQLIYVSDNTKPQRLLKWHIG
QVNCVEFSTDGTYLLSGGQEKVLVFWHLESDNQQFLPRLNGEIVDIELSASTEELYGVSL
LLNGSDREFLVLSAVDLTSRLNVNGVRPRFVTDVETIEKDRRRLAKNSVVLEEDNLTKIK
HDFSSHFEVHPVSSHCYFPYGAHLQSYDFVRNEQISVITAAPTIQAGKVRSETSIQDPEI
EQLAFSHDGKWMCTFDKLQPPEIDNLLSRNDVQYALKFWNYVDGKDRGGWSLSTKIIDPH
GPGVDVVAVAPAPQSYNDGLAFVTADVKGGLRLWRPRVPKEIYQKVGKDKKLQQTAWTLR
KVRNGNERTDVQSISICWSPDASVIAIGQEVSISLIDVNTFEETPVQIPSIAGSRVRCLN
IIDKYLVILARDRLVSFDLLTFQTTDLAVKVHTQPGSRNLLAVDQNRGVFCVCVNYYSKT
YNLRSRIFVFEPAKLQPLYVSDHDTGISSVRFASGMSSFVIVDTDSRIGILGAGVSSLQE
QRELDRAYELSTLLSNAKQMASIRKTESEAENERKVLNSQIFEPILDNLEGLPLEALFDR
VMKIIV
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atggtgctctccgactggaaccttaattttggtgctggcggccgtcttctcgggcgtgcg
cagctcgtgtccgccgattccaagtttgccattgttcccttcaagtcacagatcaaagtt
tactccttggccacccgtcagtcagtgcgtagcattagactcgatctcgatctttctctg
gtggtggatgctgcgttcagcacacaagatccaaaccttttgtacttgtttacgaggact
aacactatggttgttgtcaactggagagaaaagctggcttcgccggtggttgccacctat
accttacagctacctgccgaaatcgtgagatttgtgcgatttggagcctctgagaacgag
ttctatttcatcattgggaaatctaccaccaaaaatcaaccacacagccgcactttgttg
aaatccactattgactctcaaactcaagagatatcgactctaaaaaacgtggtgcttttt
gccatgtctgttgatagaagcacgcttgcatacctcacaaataaaaatcagttgtatttc
cagtccggagacggtcccctggagatgattcaatttgcttacaagacgcctattacctcg
ttggccgtctctaatgcacagaccccgatgatcgctctgggaacctcgtcaggtattatc
cagcttatttacgtttcagataacaccaaaccccaacggctgctcaagtggcacattggc
caggtcaactgtgttgaattcagtacagacggcacttatctgctatctggaggtcaagaa
aaagttcttgtcttttggcacctggaatcggataaccagcagttccttcctcgtttgaat
ggagaaattgtggacatcgagctttctgcctcaacagaagaattgtacggtgtcagttta
cttttgaacggctccgatagagaatttttggttttgagtgcggtggatttgacttccagg
ttgaacgtcaatggggtacgtccaaggtttgtaaccgatgttgagaccattgaaaaagac
cgtcggcgactggcaaagaacagcgtcgtgttggaagaggataatttgacgaaaatcaaa
cacgacttctcgtctcactttgaggtccatcctgtttccagccattgctacttcccatat
ggagcacatttacagtcgtacgattttgtcaggaatgagcaaatctccgtgatcactgcc
gcaccaacaatccaggcaggtaaagtccggagcgagacatcaattcaggatccagaaatt
gagcagcttgcattcagtcacgacggaaaatggatgtgcacattcgacaaactccagcct
ccagaaattgacaatcttctttctcgcaacgacgtccaatacgccctgaaattctggaac
tatgtggatggtaaagatcgaggtggctggtcattgtcgacaaaaatcatcgatcctcat
ggaccaggagtcgatgtggtggccgtggctccagccccacaatcttacaacgatggtctt
gctttcgtaactgccgatgtcaagggtggcctgcgtctctggagaccacgggtgccaaag
gaaatataccaaaaagttggaaaggacaagaaactacaacaaaccgcatggactctacgt
aaagtacgcaacggaaatgagcgcactgatgtccaaagtattagcatctgctggtcccca
gacgcatcggtgattgctattggccaggaggtgagcattagcctcattgacgtgaacacg
tttgaagagacaccagttcaaatcccatctatcgctggctccagggtgcggtgtctgaac
attatagataaatatctggtgatacttgccagagacagattggtttcatttgatctgctc
actttccagaccacagaccttgccgtgaaagtccacacacagcccggaagtcgcaatctg
ctggctgttgaccaaaacagaggagttttctgtgtttgcgtgaattattactcaaagacc
tataatttgagatcacgaatttttgtgtttgagccagcaaaattacaaccgctttacgtt
tccgaccacgacaccggtatatctagtgtgaggtttgcctctggaatgtcgtcttttgtc
atcgttgatacggactcgcgcataggaattttgggagcaggagtttcttctttgcaagag
cagagagagcttgaccgcgcgtacgaactcagcacccttctcagcaacgccaaacaaatg
gcttccattaggaaaaccgagtcggaagcggagaacgagagaaaagtgcttaactcgcaa
attttcgagccgatcctcgataatttggagggacttcctctcgaggccttatttgataga
gtgatgaaaataattgtgtaa
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