Ogataea parapolymorpha: HPODL_02329
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Entry
HPODL_02329 CDS
T08137
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
opa
Ogataea parapolymorpha
Pathway
opa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
HPODL_02329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
opa03400
]
HPODL_02329
DNA repair and recombination proteins [BR:
opa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
HPODL_02329
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
FtsZ_C
AAA_27
AAA_22
Motif
Other DBs
NCBI-GeneID:
25771782
NCBI-ProteinID:
XP_013937432
UniProt:
W1QL20
LinkDB
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Position
I:complement(855300..858116)
Genome browser
AA seq
938 aa
AA seq
DB search
MSSIRPELKFADDRDQSSFYSKYFRLPPKSARTLRVVDKGEYYIVLDEDAELVADLIYKT
QSVVKTATAEKRTVQYITLSPAVFANLLKLVVVDSGHKLEIYSKNWDNMRTASPGNLSEI
EELINTADLNAVSILAALKLVSSSSEGKKLGLSFYDPNAKILGVTEFYDNDLFSNLEALL
IQTGVKECLVPASASSDPDMDKIKQLIDRCDIVVSEGRSADFSDKNIEQDVARLTGNELT
LSANELSSLHVGLACCNAILVYLSLLADQSNFGSINVVKYDLEQFMKLDYAAVRATNLFP
PPNYNNTMNKTSSLFGLLNNCKTVGGTRLLSQWLKQPLVDVQEIQNRHSIVGHLIDDLNL
RESLQTQFLNEVPDISRLVKRLANPRGTKSLDDVIRLYQLCIRLPDLLDFLGTSMDSLEP
ENAVRKLFQEFWIEPIAQYAGALSKFQEMVETTVDLESLDNASSAQGSMVAINPEFDASL
MEISHKIEQVKSQMRHEHELAGEDLGMELDKKLKLEIHHVHGWCFRLTRNDSSCIRGKKK
YRELSTVKAGVYFTTSELSQLNSEVKSLEEQYDNGQSEVVKEIVTITATYSSIFLKLSIE
LSKLDVLVSFAHTCAFAPVPYTRPEKIHGLGSPERRVRLREARHPCLEQQDGLSFIPNDI
NFCRDSEEFLIITGPNMGGKSTYIRTMGVIALMNQIGCYVPAGEGAELCIFDSVLARVGA
SDSQLKGVSTFMAEMLEMSSILKTATSNSLIIVDELGRGTSTYDGFGLAWAISEHICKEI
RAFTLFATHFYELTALADKYTAVKNLQVVAHTDTSSDAKNITLLYKVEPGVSDQSFGVHV
AEIVKFPRKIIEMAKRKASDLDDINKRTAKQTRSGSPEILEANEVLKTALKKWKKRVEER
GGLESLGPDEAEAELRKVVESDFQKDFQSGVLQEMLKL
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcatccgtccagagctgaaatttgccgacgatcgcgaccaatcgtcattctac
agcaagtatttcagactgcctccaaagtctgcgcgcactttgcgcgtcgtcgacaagggc
gagtactatattgttttggatgaggacgcggagctggtggccgatttgatatacaaaacc
cagtctgtggtgaagaccgcgaccgcagagaaacgtaccgtgcagtacatcacgctgtcg
cccgctgtttttgccaatctgctgaaattggtggtggtggactcgggccacaagctggag
atatattccaagaactgggacaatatgcggactgcatcgccgggaaatctttcagaaatt
gaggagctaatcaacacagctgacctgaatgctgtctcgattttggccgctctcaagctc
gtgagctcttcctctgagggcaagaaattaggactttcgttctacgacccgaacgcaaaa
atactcggagtgacagaattttacgacaacgatctattttcgaacctggaggccctgttg
atccaaacgggcgtcaaggagtgtctggttcctgcgtctgcatcgtccgacccagatatg
gacaagatcaaacagctgatcgatagatgcgacattgtcgtgtctgagggccgttctgcc
gacttttcagacaaaaacatcgagcaggacgttgcgcgattgaccggaaacgagcttacg
ctttcggcgaacgagctctcgtcgctacacgtggggctcgcctgctgcaacgccattctt
gtctatctctcgttgttggctgaccagtccaactttggatccataaacgtggtcaagtac
gatcttgagcagttcatgaagctcgattacgcggccgtgagagccacgaacctgtttccg
ccgccaaactacaacaatacgatgaataagacgtcctctctgtttgggttgctcaacaac
tgcaagacggtggggggcacccgactactgtcgcagtggctcaaacagccgctagttgac
gtccaggaaatccaaaaccgtcattctattgttggccaccttattgacgacctgaacctc
cgcgagtctctgcagacgcagtttttgaacgaagtgccggacatttcgagactcgtgaaa
aggctggccaatccgcgtggaacaaagtcgctcgacgacgtcattagattgtaccagctg
tgcatcagactgccagacctgcttgacttcctgggaacctcaatggacagcttggaacca
gaaaacgccgtcaggaaactgttccaggagttctggatcgagccaatcgcccagtacgct
ggcgccttgtcgaagttccaggagatggtggagaccaccgtggacctggagtctctggac
aatgcgtcgtccgcacagggttcgatggtagcaatcaatccagaattcgacgccagtttg
atggaaatcagccacaagatcgagcaagtcaagtcccagatgcgccacgaacacgaacta
gcaggcgaagacctgggaatggagcttgacaagaaactaaaactcgagatccaccatgtt
cacggctggtgtttccgtctgacaagaaacgacagctcatgtattcgcggtaagaaaaag
tacagagagctgtctacggtcaaggcgggagtctacttcacgacttctgagctcagccag
ctcaactcggaggtcaagtcgctggaggagcagtacgataacggccagtcggaggtggtg
aaggagatcgtcaccatcaccgcgacatattcctcgattttcctcaagctgtcgattgag
ttgagcaagctggacgtgctggtctcttttgcccatacctgcgcttttgcgccggttccg
tacacgcggccggaaaaaatccacggactgggaagcccggagcgtcgcgtccgtctcagg
gaagcgcgtcatccatgcttagaacaacaggacggactgtcgttcattcccaacgatatc
aacttttgtcgcgactcagaggaattcctcatcatcacaggacccaacatgggtggtaag
tcgacctacatccgtaccatgggagttatcgctttaatgaaccagataggctgttacgtg
cctgccggggagggagcagagctgtgtattttcgactctgttctggcccgtgttggtgcg
tcggattcgcagctgaaaggcgtctcgacgttcatggcagagatgctcgagatgtcttcg
attctgaagactgccacgtcgaactcgcttatcattgtggacgagctcggccgcggaacc
tcgacatacgacgggtttgggctcgcttgggccatttccgagcacatttgcaaggagatc
cgcgcgttcacgttgtttgccacgcatttctacgagctcaccgcgctagccgacaagtac
actgcggtgaaaaatcttcaagtggtggcacatacagataccagctctgacgcgaaaaat
attacgctgctctacaaggtggagccaggagtgagcgaccagtcgttcggtgtacacgtg
gctgagatcgtgaagttcccaaggaagatcatcgagatggccaagcgcaaggccagcgac
ctggacgatatcaacaaacgtacagccaaacagacgagatccggcagtccggagattttg
gaagccaacgaggtgcttaagacggcgctgaaaaaatggaaaaaacgcgtcgaggaacgc
ggaggactcgagagccttggccccgatgaggccgaggcagagctgcgcaaggtggtcgag
tcagacttccagaaagacttccagtcgggtgtcctgcaggagatgctaaaactgtga
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