Ogataea parapolymorpha: HPODL_02525
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Entry
HPODL_02525 CDS
T08137
Name
(RefSeq) ATP-dependent RNA helicase DBP2
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
opa
Ogataea parapolymorpha
Pathway
opa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HPODL_02525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
opa03041
]
HPODL_02525
03009 Ribosome biogenesis [BR:
opa03009
]
HPODL_02525
Enzymes [BR:
opa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPODL_02525
Spliceosome [BR:
opa03041
]
Complex A
U1 snRNP components
U1 related factors
HPODL_02525
Complex B
HPODL_02525
Ribosome biogenesis [BR:
opa03009
]
Eukaryotic type
Pre-60S particles
Helicases
HPODL_02525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
25771978
NCBI-ProteinID:
XP_013932309
UniProt:
W1Q6V2
LinkDB
All DBs
Position
VII:241547..243251
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AA seq
529 aa
AA seq
DB search
MSYTNNNRNSYRTYGGGDRSRFGRDDRNGNYGRRDDYELGANLTKPNFDLETLPKFEKNF
YKEAEAVASRSEDEVAAFRKEHDMTVYGRDIPRPITSFDEAGFPDYVLKEVKAQGFPNPT
AIQCQGWPMALSGRDMVGIASTGSGKTLSYCLPAIVHINAQPLLQPGDGPICLVLAPTRE
LAVQIQKECSKFGRSSRIRNTCVYGGVPKGQQIRDLARGAEICIATPGRLLDMLDSGRTN
LKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKSVQTLARDYLNDYI
QVNIGSLDLAASHNIKQIIDVCSEYEKRDKLAKHLETAMQDPQAKVIVFASTKRTCDEIT
AYMRSEGWPALAIHGDKEQRERDWVLSEFRSGRSPIMVATDVAARGIDVKGVTTVINHDM
PGNVEDYVHRIGRTGRAGEKGTAITMFTDGNSGQAHDLITILREAKQEIPPQLQALDKKG
NRGNGYGYGRGRGGYGRGRGGYGRGGRGGRGGSRGFSGSNSAPLGNRRF
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatactaacaacaatagaaatagctaccggacttatggcggtggagatagaagt
aggtttggcagagacgatcgcaatggcaactatggacgcagagacgattacgagcttggt
gcaaatttgaccaagcctaatttcgatctggaaactttgcccaagttcgaaaagaatttt
tacaaagaggcagaggcggttgcttcgcggtcggaagatgaggtggctgcgtttagaaag
gagcacgatatgacggtgtatggaagagacatccctagacctatcacttcgttcgacgag
gctgggttcccagactacgttttgaaggaggtgaaggcgcagggattccctaatcctacc
gccatccagtgtcagggatggccaatggccctttccggacgcgatatggtgggaattgct
tcgactggttctggaaagaccctgtcgtactgtttgccggctatcgtgcatatcaatgcc
cagccccttttgcaacctggcgatggtcctatctgtttggttttggccccaacgagagag
ctggctgtgcagattcagaaggagtgctccaagttcggacgctcctccagaatcagaaac
acctgtgtctacggtggagtgccgaagggccagcagatcagagaccttgccagaggagct
gaaatctgtattgccactcctggtcgtcttctggacatgctggactccggccggacaaac
ctcaagcgtgtgacgtatttggttctggacgaggccgacagaatgctggacatgggattc
gagccccagatccgcaagattgtcgaccagatccgtcccgatagacagacgctgatgtgg
tctgccacctggccgaagagcgtccagaccctggccagagactacctgaacgactacatc
caggtcaacattgggtctttggacctggccgcctcgcacaacatcaagcagatcatcgac
gtgtgttccgagtacgagaagagagacaagcttgccaagcacctggagactgccatgcag
gacccacaggctaaggtgattgtctttgcctcgaccaagagaacgtgcgacgagatcact
gcgtacatgcggagcgagggctggccagcgttggctattcatggcgacaaggagcaaagg
gagagagattgggttctgagcgagttcaggtccggacggtcacctattatggtggccacg
gacgtggctgccagaggtattgacgtcaagggagtcaccacggtgatcaaccacgacatg
ccgggcaacgtcgaggactacgtccaccgtattggaagaacgggacgtgctggcgagaaa
ggaacggccatcacgatgttcacggacggcaactccggccaggcccacgacctcatcacc
attttgagagaggccaagcaggagattcctccgcaattgcaagctttggacaagaagggc
aacagaggcaatggatacggctatggtagaggccgcggaggatacggtagaggccgtggt
ggctatggcagaggtggccgtggaggaagaggcggctcgagaggcttttctggtagcaac
tctgcgccattgggaaacagaaggttctaa
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