Ogataea parapolymorpha: HPODL_02564
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Entry
HPODL_02564 CDS
T08137
Name
(RefSeq) hypothetical protein
KO
K14408
cleavage stimulation factor subunit 3
Organism
opa
Ogataea parapolymorpha
Pathway
opa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
HPODL_02564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opa03019
]
HPODL_02564
Messenger RNA biogenesis [BR:
opa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
HPODL_02564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_15
RNPP_C
DUF6845
Motif
Other DBs
NCBI-GeneID:
25772016
NCBI-ProteinID:
XP_013932349
UniProt:
W1Q6W8
LinkDB
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Position
VII:307897..309663
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AA seq
588 aa
AA seq
DB search
MDTKRRKLDDPLTIESLAESLDRARWLKLVHGSPTTETFEAYLKVFFNDGEVWKEYIEHE
MAKNDDAKVEALFSRCLTKVFDVELWKVYLKYVRKVNDIVTGGEQARAVVMKAYDFAIDN
VGLDFINGQEIWDEYFRFLNEWNPVSSIEQSSKNAHLRSLYRKLIGTPLRQLDQNWRKYL
DFENETDQANARRHINEKSQEYMKLRPLNQELINLTAYLRPSDEAKNSRNQLEHWKRWIA
WERSNKLNLPQESMDKRVNFVYRLSTQYLRFQPEVWYNYAVYLFASDKSEQGMEVLGHAL
VLNPESISLVLLVSGQYERSSEIEKVKESWNRLIDRLTKHYDTEENEKTKATLGQCITCV
YSLLMKACRRAAGMKEARSIFSVARKFKGVTWHIFVDYAMMEHQNSDLKIALRCFELAMK
YFGQDYAFVETYLNFLLSMNDLGNSKKLLEQSIENFKDKRSTLEKVYRRFYRIELEFGDT
DSIRALEKRYREAFPDSNEFQFLSKSFGEFNAIKLLDEYTLTGKEEAVDKVAEIKLKEIE
IPEIEPFAVRDEIYNLLRYLPKPEYYDDKPPVFDVKKSVQFFRNIKLT
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atggacaccaagagacggaaattggacgatcccctgaccatcgagtctcttgcagagtct
cttgatagagcccgctggctgaagcttgttcatggttcgccaacaacagagacgttcgag
gcgtatctcaaggtgttcttcaacgacggtgaggtttggaaagaatacatcgaacacgaa
atggccaagaacgacgacgccaaagtggaggcgttattttccagatgtctcaccaaggtc
tttgatgttgagctgtggaaagtgtacctgaagtatgtgaggaaagtgaacgatatcgtt
actggaggagaacaggctagggcagtggtaatgaaagcctatgactttgccattgacaac
gtggggttggacttcatcaacggccaggaaatatgggacgagtatttccgttttctgaac
gagtggaaccccgtttcgagcatcgaacagtcatccaaaaatgcgcaccttagatcttta
tatagaaagctcatcggcactcctcttcgccaactagaccaaaattggagaaagtacctg
gactttgaaaacgaaacggaccaggcgaacgccaggcgccacatcaacgagaaatcgcaa
gaatacatgaagttgcgtcctttgaatcaagaacttataaatctcactgcttatttgcgt
ccatcggacgaggcgaaaaatagccgcaaccaacttgaacactggaaacgttggattgcg
tgggagcgcagcaacaagctcaacttacctcaagaatcaatggacaagagagtcaacttc
gtctacagactgtctacccagtatctgcgattccagccagaagtgtggtacaactacgct
gtgtacttgtttgctagcgacaaatctgagcagggtatggaggtgctaggccacgccttg
gttctgaacccagaaagtataagtttagtgcttttggtctctggccagtacgaacgctcc
agcgagattgaaaaagtcaaagagtcctggaatagacttattgataggctgacaaaacac
tatgacaccgaagaaaatgagaaaacaaaggcaacacttggacagtgcatcacgtgtgtg
tattcgttgctcatgaaggcatgtcgcagagcagcaggcatgaaggaagcgcgtagcatt
ttttctgttgcacgaaaattcaaaggtgtcacatggcacatttttgtggactacgcaatg
atggagcaccaaaatagcgatttgaagattgccctacggtgttttgagcttgccatgaag
tattttggacaggactatgcttttgttgagacgtacttaaactttttgctttcaatgaac
gatctgggcaactccaagaaactgctagaacagtccatcgagaatttcaaagacaaacgc
tcaactttggagaaagtgtaccggcgtttttatcggattgaactggaatttggagacacc
gattcgattcgcgcgctcgagaaaaggtatagagaagctttccctgacagcaacgagttc
caatttttgtcaaaatcttttggtgaattcaatgcgatcaagctgctggacgagtacaca
ttgacaggaaaagaagaggcggtcgacaaggttgccgaaattaaattgaaggagattgaa
attcctgaaattgagccgttcgctgtgcgagatgagatctacaacctactcagatacttg
ccgaagccagaatactacgacgataaaccgcccgtgttcgacgtgaaaaagagcgtgcaa
tttttcagaaacataaaattgacataa
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