Ogataea parapolymorpha: HPODL_02586
Help
Entry
HPODL_02586 CDS
T08137
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
opa
Ogataea parapolymorpha
Pathway
opa03020
RNA polymerase
opa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HPODL_02586
09124 Replication and repair
03420 Nucleotide excision repair
HPODL_02586
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opa03021
]
HPODL_02586
03400 DNA repair and recombination proteins [BR:
opa03400
]
HPODL_02586
Enzymes [BR:
opa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HPODL_02586
Transcription machinery [BR:
opa03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
HPODL_02586
DNA repair and recombination proteins [BR:
opa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
HPODL_02586
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
25772038
NCBI-ProteinID:
XP_013932372
UniProt:
W1Q7J6
LinkDB
All DBs
Position
VII:complement(349080..354152)
Genome browser
AA seq
1690 aa
AA seq
DB search
MDPTTNKPRENGLNDPRLGSIDRNFRCQTCSEDMQECPGHFGHIELAKPVFHIGFVSRIK
KVCECVCMNCGKILLDEATNPQFAAAIKIRDPKKRFNAVWSLCKTKMVCEVDQPVDDGSG
RTQHLRGGCGASQPTIRRDGLKLWGSWKKSNSDDDGEQAERRQISAAEVLNIFKHISPED
CHKLGFNEDYARPEWMLITVLPVPPPPVRPSVAFTDSKRSEDDLTYKLADILKANINVQR
FEMDGSPQHVISEFEALLQYHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRLRG
NLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKVLSYPEIVTPYNIQKLTELVRNGPNE
HPGAKYVIRDSGDRIDLRYNKRAGDIQLQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAH
RVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVPQSYETRAELEQICAVPLQIVSPQSNK
PVMGIVQDTLCGIRKMTLRDTFIEYDQVMNMCFWIPNWDGVVPQPAILKPKPLWSGKQVL
SMCIPQGIFLQRLDGSLLSPKDSGMLIVNGEIMFGVVNKATVGSSAGGLIHTVMREKGPK
VCAQLFGNIQKVVNYWLLHNGFSIGIGDAIADSETMKTITETIAIAKEKVQEVIMDAQKN
LLEAEPGMTVRESFEQKVSKLLNEARDSAGKSAETSLKDSNNVKQMVTAGSKGSYINISQ
MSACVGQQIVEGKRINFGFADRSLPHFTKDDYSAESKGFVENSYLRGLTPQEFFFHAMAG
REGLIDTAVKTAETGYIQRRLLKALEDIMVHYDGTTRNSLGDVIQFIYGEDGLDGTQVEK
QTVDTIPGSTEAFEKRYRVDLMSPETSIRPDLIEYGAEIIGDIELQKYLDEEYEQLLADR
EYLRTKCFTTGENNWPLPVNIRRVIQNAQQIFHVDQTKASDLPIKDIVVGVQELSKKFKV
IRGEGEILAEAQENATLLFQCLVRSRLATRRVLEEFRLNKDAFEWVLGTIEQQFLKSLVN
PGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNVKTPALTVY
LKEEYASDIEKAKSIQSAIEHTTLKNVTASTEIYYDPDPRSTVVEDDIDTVEAYFAIPDE
KVEETIHKQSPWLLRLELDRAKMLDKQLTMSQVAGQIMDNFGDDLFVIWSEDNAEKLVIR
CRIVREEKALDEEEEETEDGLLKALEAQMLESISLRGISGISRVFMMKYDKTYIDETGDF
AKKEEWVLETDGVNLADVLAVEGVDTTRTYSNSFVEILFVLGIEAARSALYKEILNVIAF
DGSYVNYRHLALLVDLMTYRGHLVAISRHGFNRNDTGALMRCSFEETVEILFDAGASAEL
DTCEGVSQNVILGQLAPFGTGSFEVYLDEEKLSMLPSDATVHASNVLQTKAVDGGSTPYE
EDNLKDDFIDAEMEDDKVAFSPMITSGVNDDRSGGFTEYGGMSSYAPTSPFSGFAPTSPS
YGATSPSYAPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPQY
SPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTS
PSYSPNNNRN
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atggatccgaccactaataaacctagggaaaatggattaaatgatcctcgactcggttca
atcgatagaaattttagatgccaaacatgctcggaggacatgcaagagtgtcctggacac
ttcggccatattgagcttgccaagcctgtgttccacattggttttgtgtccaggatcaag
aaagtctgcgagtgtgtctgcatgaactgtggtaaaatcttgctggacgaggccacaaat
ccacaattcgcggctgctatcaaaatcagagaccccaagaagcgttttaatgccgtttgg
agtctctgtaaaacgaaaatggtgtgtgaggtggatcagccagttgatgacgggtccggg
cgtactcaacatcttaggggaggctgtggggccagccaaccaactatcagaagagatggt
ctcaaactctggggttcttggaagaagtctaacagtgatgatgatggagagcaggcagaa
agaagacaaattagcgcagcagaagttctcaatattttcaagcatatttcacctgaggac
tgccataagctgggcttcaatgaagattacgccagaccagagtggatgttaattacagtc
ttgcctgttcctcctcctcctgttagaccatctgtcgcattcaccgattctaaaagatcg
gaagatgatttgacgtataaattggccgatattttgaaggccaatataaatgttcaaaga
ttcgaaatggatggttcccctcagcatgtgatcagcgaattcgaggcgttactacagtat
catgtggctacttatatggacaatgacattgcaggacagccgcaggctttgcaaaagagc
ggaaggccaatcaaatctatcagagctcgtttgaagggtaaagaaggtagactcagaggt
aacttgatgggtaaaagagtggatttctctgccagaacagttatttcgggtgatccgaac
ttggatttggatcaagtgggtgttccgaaatctattgcgaaagtcttgtcctatccggaa
attgtcactccatataatattcaaaagctaactgagctggtgcgtaatggaccaaatgag
cacccaggagcaaagtatgtgataagagattcgggggatagaatcgatcttcggtacaac
aaaagagcgggcgacattcaattgcaatatgggtggaaggttgagcgtcatttgatggat
gatgatcccgtcttgttcaaccgtcaaccctctttgcataaaatgtccatgatggctcat
agagtgaaagtcatgccttactccacatttagaatgaatttgtctgtgacctcgccttat
aacgccgatttcgatggtgacgagatgaatctgcacgttccgcagtcgtacgaaactagg
gcggaactcgagcagatttgcgcggttccacttcaaattgtgtctccgcagtctaacaaa
cctgtcatgggtattgtgcaggatactctttgtggtattaggaagatgactttgagggac
acttttattgaatatgaccaggtgatgaacatgtgtttctggattcctaattgggatggt
gttgttccacagccggcaatcttgaaaccaaaaccattatggtcagggaagcaggtgctt
tccatgtgtattcctcagggtattttcttacagagactggacggttcgctcctgtctcct
aaagactcaggaatgctcattgtgaatggtgaaatcatgttcggtgtggtcaataaagcc
actgtgggatcgagtgccggtggtcttattcacaccgtcatgcgtgagaaggggcctaaa
gtttgcgcacaattgtttggaaatattcaaaaggttgtgaactattggctccttcataat
ggattctccattggtatcggtgatgccattgcagattctgagacaatgaagaccattacc
gagactattgctattgccaaggaaaaagtgcaggaggttatcatggacgcacagaaaaac
ttgttggaagccgaacccggaatgactgttagagagtccttcgaacagaaagtctccaaa
ctgcttaacgaagcaagagactctgctggtaaatctgcagaaacctccttgaaagactcg
aataacgtgaaacaaatggttacggccggatccaaaggttcgtatatcaatatctctcag
atgtctgcgtgtgtcggtcaacagatcgtggaaggcaagcgtatcaacttcggtttcgca
gatcgttctttgcctcacttcacgaaggatgactactctgctgaatccaaaggattcgtt
gaaaactcttatttaagaggtcttacgccacaggaattcttcttccacgcgatggcagga
agagagggtttgattgatacggctgtgaaaaccgccgaaacaggttacatccaacgtcgt
ttgcttaaagcattggaagatattatggttcactatgatggaactacaagaaattctttg
ggagatgttattcagttcatttatggtgaagatggtctcgacggtactcaggtggagaag
cagacggtggacaccataccgggctccactgaagctttcgagaagagataccgcgttgat
ctgatgagtcctgagacctcgattcgtcctgacttaatcgaatatggcgcagagatcata
ggtgacattgaactccagaaatatctcgatgaagaatatgagcaactcttggccgacagg
gagtatttgagaaccaagtgtttcaccacaggtgaaaataattggccacttccagtgaac
atccgcagagtcattcaaaatgctcagcaaattttccatgtcgatcaaacaaaagcaagc
gatttgccaatcaaagacattgttgttggtgtgcaagagctttcaaagaaattcaaagtc
attcgtggagagggcgagattttggcagaggctcaggaaaatgccactttgctgttccag
tgccttgtccgttctagattggccaccagaagagttcttgaagaattcagactcaacaaa
gatgcatttgagtgggttttgggaaccatagagcagcagttcctgaaatcccttgtgaat
ccaggtgagatggtgggtgtcattgctgcacagtccattggtgagcctgctactcaaatg
accttgaacaccttccattatgctggtgtttcgtcgaagaatgtcactttgggtgtccca
agactgaaggaaattctcaatgtcgccaagaacgtcaagactcctgcgttgacggtttac
ctgaaggaagaatacgcctcggacattgagaaggccaaatctatacaatccgctattgaa
cacaccactttgaagaatgttactgcatccacggagatttactatgatccagatccacgt
agtactgttgttgaggacgatattgacactgtggaagcctacttcgccatccctgatgaa
aaggtggaggaaacaattcacaaacaatctccatggcttttgagattggagcttgacaga
gccaagatgttggataaacagttgaccatgagtcaagttgcaggccaaattatggataac
tttggtgatgatttgttcgtcatctggtccgaagataacgctgagaagcttgtgatcaga
tgtagaatcgtccgtgaagaaaaggctttggatgaagaagaggaagagactgaggatggg
ctccttaaggcgcttgaagctcaaatgcttgaatcgatctctttaagaggtatcagtggc
atttcgagagtcttcatgatgaagtacgacaaaacatatattgatgaaacaggagatttc
gccaagaaggaagagtgggtcttggaaaccgatggtgtcaatcttgctgatgtcttggca
gttgaaggagttgataccacaagaacttactcgaactccttcgtggaaatcttgtttgtt
ttgggtattgaggctgcgagaagtgcattgtacaaggagatcttgaacgttattgcattt
gatggttcctatgtcaactacagacatttggcattattagttgatttgatgacgtacaga
ggtcacctggtggctatttcgagacatggtttcaacagaaatgatacaggagctctcatg
agatgttcttttgaagaaaccgtggaaattttgtttgatgcaggtgcctctgctgaactt
gatacttgtgaaggtgtttctcagaatgttattcttggtcagcttgcaccatttggaact
ggctcctttgaagtgtatttggacgaagagaaattgtctatgctaccttctgatgccaca
gttcatgcatccaatgttcttcagaccaaggccgttgatggtggttctacaccatacgag
gaggacaatttgaaggatgacttcattgatgctgagatggaagatgataaggttgcattc
tctccgatgatcacttctggtgtgaatgatgaccgtagcggaggatttacagagtatggt
ggtatgagctcatatgctcctacttcaccattctctggatttgccccaacttctccaagc
tatggcgccacctctccgtcctacgctccaacatccccatcctactctccaacttcacct
tcttactcaccaacgtcaccatcctactcgccaacatcgccatcttattcaccaacctcc
ccatcctactctccgacatctccttcctattctccaacatctccttcctattctccgacg
tccccatcctattctccgacgtctccatcttactcaccaacctcgccttcctattcacct
acttcaccttcctattcaccaacttcaccttcctactctccaacatccccacaatactct
ccaacctctccatcctactctccaacgtccccacaatactctccgacatcaccacaatac
tcaccaacatccccccagtattcaccgacatcaccccaatattcacctacttctcctcaa
tattctccaacttctcctcaatattctccaacttctcctcaatattctccaacgtctcct
caatactctcctacttcaccacagtactctccaacgtctccacagtactctccaacatct
ccaagttactcaccaaacaacaaccgaaactaa
DBGET
integrated database retrieval system
