KEGG   Ogataea parapolymorpha: HPODL_02725
Entry
HPODL_02725       CDS       T08137                                 
Name
(RefSeq) Subunit of the COMPASS (Set1C) complex, which methylates histone H3 on lys 4
  KO
K14962  COMPASS component SWD2
Organism
opa  Ogataea parapolymorpha
Pathway
opa03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:opa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    HPODL_02725
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:opa03019]
    HPODL_02725
   03036 Chromosome and associated proteins [BR:opa03036]
    HPODL_02725
Messenger RNA biogenesis [BR:opa03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     HPODL_02725
Chromosome and associated proteins [BR:opa03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     HPODL_02725
    COMPASS/SET1 complex (yeast)
     HPODL_02725
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 EIF3I WDR55 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st ANAPC4_WD40 NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_RIG_2nd Beta-prop_SPT8 Beta-prop_DCAF4 DUF7165 Beta-prop_NOL10_N RMC1_N
Other DBs
NCBI-GeneID: 25772176
NCBI-ProteinID: XP_013932516
UniProt: W1Q807
LinkDB
Position
VII:complement(627637..628629)
AA seq 330 aa
MATPISANLLLSLKPAKLFNNHVSNTPITSIDFDHTGQFLLTAGVDESIHLYDVAKGKHV
KPIYSKKYGCHLAKLARKENTCVFASTKENDTIRYLSLHDNSFIRYFKGHTALVTDLAMA
DLNHMFVSAAYDHTVRLWDTRSANCQATLVTDDRPSSIALDPSNTVVAIHNEYSNVLSLH
AVAHITDRPFTTVVCDFAKPSSVTKIDFLNNNKYILITTNSTEHFLLDAFNLSLVARLPG
QLPLIEREYPDTGNLTVSPDCRFIFGGNGDGSVLVWDLKLLSTQSLPAVLYPVKKIENET
KTLPRMLLFDPQYCVMASADSELCLWTPSS
NT seq 993 nt   +upstreamnt  +downstreamnt
atggcgacgccaatctcggctaaccttctgctttcgctgaagccggcaaagttgttcaat
aatcacgtatcgaatacacccataacatccattgatttcgatcacacaggccagttcctc
ctaactgccggtgtagacgaaagcatacatctctacgatgtcgccaaaggaaaacatgtc
aagcccatctactccaagaaatacggctgccatttggcaaagctggcccgcaaggaaaac
acttgtgtgttcgcatccaccaaggaaaatgatacaattcggtatctctcgctgcatgat
aattctttcatcagatattttaaaggccatacggccctggtgacagatctggcaatggcc
gatcttaatcatatgtttgttagtgccgcctacgaccacactgtccgtctttgggacaca
aggagcgccaattgccaagcaactctagtaactgacgacagaccgtcctccatagccctt
gatccatccaacacagtcgttgccattcataacgaatattcaaatgttctatccctgcat
gcagtggcgcatattacggaccggccatttaccaccgtggtgtgcgactttgccaaacca
tcgtccgtcacaaaaattgacttcttgaacaataataaatatatcttgatcaccacaaat
tccacagagcacttccttctagacgctttcaatttgagcttggtagcaagactaccaggc
cagctgcccctcatcgagagagaatatcccgacacgggcaacttgacagtctctcccgac
tgtcggttcatctttggtggcaacggcgatggttctgtactcgtatgggacttgaagctt
ttgtcgactcaaagcttgccagcggtattgtatccagtcaagaaaatagaaaatgagacg
aaaactcttccgcgaatgcttctgttcgacccccagtactgtgtgatggcatcggccgac
tcggagctgtgtctgtggacgccaagctcataa

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