Ogataea parapolymorpha: HPODL_02842
Help
Entry
HPODL_02842 CDS
T08137
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
opa
Ogataea parapolymorpha
Pathway
opa03440
Homologous recombination
opa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HPODL_02842
03450 Non-homologous end-joining
HPODL_02842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
opa03032
]
HPODL_02842
03400 DNA repair and recombination proteins [BR:
opa03400
]
HPODL_02842
DNA replication proteins [BR:
opa03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
HPODL_02842
DNA repair and recombination proteins [BR:
opa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
HPODL_02842
BRCA1-C complex
HPODL_02842
NHEJ (non-homologous end-joining)
MRX complex
HPODL_02842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_21
AAA_15
SbcC_Walker_B
AAA_29
ABC_tran_CTD
ABC_tran
AAA_13
AAA_22
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
25772291
NCBI-ProteinID:
XP_013932639
UniProt:
W1Q790
LinkDB
All DBs
Position
VII:809983..813795
Genome browser
AA seq
1270 aa
AA seq
DB search
MASIYKLSVSGVRSFSGDTHETIQFERPLTLIVGANGSGKTTIIEALRYATTGDLPPNSK
NGAFVNDPSMTGATETKAQVKLAFQNVNRTSMVLTKSLAAFKNARTGTTSFKTRENQLVA
IHNGEKQTVTSKMADIETAVPQQLGVSRAVLNYVIFCHQDESLWPISDSASLKKRFDEIF
DSVKFIKVLETFRAIQKEMNVDIRVINNTVEHLRNDRARAHHKHAQVAELNRQVDRLNAE
SETLAREIEAVNKEADRLFATNQDYEKTISRLEYLRQQESSLAQQMDVIRSTTTRVDLPD
AQIREQLDNFANVLVEKRSAVEQLRVQIESRSAQLARAREEYNTSVREEGRLRGLFERHE
QNRSEKQRLEQQLDQTRLDALAAEYADKEAAHKAALEDVEFELTTLKEELAREAQHAEYV
RNDVDALETKRAKFQQILSLSSSNQARLERERTELAAEELELQQLRDSSPLAAINEKIAQ
TEKQIRQLEVEQEDLLRKVSQASRQSDSTAKVYYLRRNLESVEQKLENAYSRLETRDVDA
FMARYKQTEAAVLEKASRVQELRETLNEAAITHRNGAQQLAGSRDELAALEKDVRTVLGA
APLAQFEELLEDAEYEFSDCDGGFKVREYCIGFNKRAIDLINHKNACLLCHREFGAADEK
SRVLELLAKQTSVLESDHSAEEALRAARDKLDRLKEVSGKVERHRKLAVELEQLQKDVEA
ARERETVAREQFESEQRDLDEQQAHKSQLASLLSAVDEVTRLRDEQVSLQRQLQGLKDDM
ALFGGQLQSMEELELAQAQTSSEMKRLRLVLERHVADREQYSRRLMGLESMIKDRRLAII
ELEKSDLDNVNVRKSLHELETEIGQLRATLDRTEQAASVLRASHAAQQERYGELKRRGED
ELAQLLPELERLRQTQAQIAALDAQIREFEQKHAGQTTFEQESARLREQIARDEVELDAL
GVQLRELENDLKDADNAERNLRYNLDLLALEQQQSEVRATIAELAQQQAESRRDEYVAQS
KQLRARQTQLQSEYSTKLGEMTQLSRQIQSVKHELQRDYKDIDERYTKEYASLQTKLSMV
TDLTTYYKAIDSAVMEFHQVKMKEINRIIDELWKKTYMGNDVDSIMVRADPIKSSTAATM
RSYNYRVVMVKNGTELDMRGRCSAGQRVLAALIIRLALAECFGLNFGMIALDEPTTNLDD
DNIESLAKALANIIQERATQRNFQLIVITHDEKFLRAMNAVDFTDHYYKVIRNERLNSTI
NKVQISQLDD
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atggccagcatctacaaactgtctgtctcgggcgtacgctctttcagcggcgatacgcac
gagaccatccagttcgagcgtccgctcacgctcattgttggtgccaacggctcgggcaaa
acaaccatcatcgaggccctgcggtacgccaccacgggcgatcttccccccaactcgaaa
aatggcgcctttgtcaacgatcccagcatgacaggcgccacagagacaaaggctcaggtc
aagctcgcgtttcagaacgtcaatcgcacgagcatggtgctcactaagtcgctcgccgcg
ttcaagaacgcacgcacggggaccaccagctttaaaacccgcgaaaaccagctcgtggcc
atccataacggcgaaaaacagaccgtcacgtcgaaaatggccgatatcgaaaccgccgtg
ccgcagcagctcggcgtctcgcgcgccgtgctcaactacgtgattttctgccaccaggac
gagagtctgtggccgatcagcgactcggcgagtctcaagaagcgattcgacgagatcttc
gactcggtcaagttcatcaaggtgctggagacgtttcgggccatccagaaggagatgaac
gtcgatatccgcgtgatcaacaacacggtcgagcacttgcggaacgaccgtgcgcgcgcg
caccacaaacacgcgcaagtcgccgagctgaaccgtcaggtcgatcggctgaatgccgag
tccgagacgcttgcgcgcgagatcgaagcggtcaacaaagaggccgatcggttgtttgcg
acgaaccaggactacgagaaaacgatcagtcgactggagtacctgcggcagcaggagagc
agtctcgcgcagcagatggacgtgatccggtcgacgacgacgcgcgtcgacttgcccgat
gcgcagatccgcgagcagctcgacaactttgccaacgtgctagttgagaagaggagcgct
gttgagcagctgcgcgtgcagatagagtctcgaagcgcgcaacttgcccgtgcgcgagaa
gaatacaacacttctgtgcgcgaggagggccgattgcgcggcctatttgagcggcacgag
caaaaccgcagcgagaaacagcgacttgagcagcagttggaccagacgcggctggacgcg
ctggcggccgaatacgctgacaaggaggctgcgcataaggctgctctcgaggacgtcgag
ttcgagctcacaacgctcaaggaggagcttgcgcgcgaagcgcagcatgccgagtatgtt
cgcaacgacgtcgacgcgttggaaacgaaacgcgccaagttccagcagatcctgtctctt
tcgagctcgaatcaggctaggctcgaacgcgagcgtaccgagctcgctgccgaggaatta
gagctgcagcagttgcgcgactcgagcccgctggccgccatcaacgagaaaatcgcccag
accgagaaacagatccgccaattggaggtggagcaggaggatctgctccggaaggtgagt
caggccagcagacagtccgacagcacggcaaaagtgtattatttacggcgaaatctggaa
tccgtggagcagaagctggagaatgcttactcgcggctcgagacgcgcgacgtggacgca
ttcatggcccgctacaaacagacagaggccgcggtgctggagaaagctagccgtgtgcag
gagttgcgcgagaccctgaacgaggcggcaatcactcaccgcaacggcgcgcagcagctt
gctggctcgcgcgacgagctcgccgcgctcgagaaagatgttcgcacggttcttggcgca
gcgccgctcgcacagtttgaagagctgctggaggacgccgagtacgagttcagcgactgt
gacggcggcttcaaggtgcgagaatactgcattggcttcaacaagcgcgcgattgacctc
atcaaccacaagaacgcatgtctgctgtgccaccgggagtttggggcggcggacgagaag
agccgggtgttggagctgcttgcaaagcagacgagtgttttggagagcgaccattctgca
gaagaagcgctgcgagctgcacgggacaagctggaccggctcaaagaggtgtcgggcaaa
gttgagcgacacaggaagctggctgtggagctggagcagctgcaaaaggacgtggaggct
gctcgagagcgtgagacggttgcccgcgaacagtttgagagtgagcagcgtgacttggac
gagcagcaggcccacaagtcccagcttgcgtcgctgctatccgcggtggacgaggttaca
aggctgcgggacgaacaggtctcgttgcaacggcagttgcagggcctaaaggacgacatg
gccttatttggcgggcaactgcaatccatggaggagctggagctggcacaggcgcagacg
agcagcgagatgaagcggctgcgattggtgttagagcggcacgttgccgatcgcgagcag
tattcgcgcaggctgatggggctggagagcatgatcaaggaccggcgactggcgatcatc
gagctggagaagtcggacctggacaacgtgaacgtgcgcaagtcgctgcacgagctcgag
acggagatcgggcagctgcgtgcaacgctggaccggacggagcaggcggcttccgtgcta
cgtgcgagccatgcggcgcagcaggaacggtacggcgagctgaagcggcgcggagaggac
gagctggcgcagctcttgccggaacttgagcggctacggcagacacaggcccagattgct
gcgctggacgcgcaaatccgcgaatttgaacagaagcacgcgggccagacgacgtttgag
caggagtctgcgcggctacgggagcagatagcgcgcgatgaggttgagctcgacgcgttg
ggcgtgcagctgcgagagctcgagaacgatctcaaggacgccgacaacgcggagcgcaac
ctgcggtacaacctggacctgctggcgctcgagcagcagcaaagtgaggtgcgggcaacg
atcgcagagctcgcgcagcagcaggccgaatcgcgacgagacgagtacgtggcgcagagc
aagcagctgcgcgcgcgccagacacagctccagagcgagtattccaccaagctgggcgag
atgacccagctatcgcggcagatccaatcggtgaaacacgagctgcaacgcgactacaag
gatattgacgagcggtataccaaggagtacgcaagcctgcagacgaagctgtcgatggtg
acagacctgaccacatactacaaggccatcgactctgcggtgatggagttccaccaggtg
aagatgaaggagatcaaccggatcattgacgagctatggaaaaaaacgtacatgggcaac
gacgtggacagcatcatggtgcgggcagacccgatcaagtccagcacggcggcaacgatg
cgctcgtacaactaccgcgtggtgatggtgaaaaacgggaccgagctggacatgcggggg
cggtgctctgcgggccagcgcgtgctggcggcgctgatcatccggctcgcactggccgag
tgtttcgggctcaacttcggcatgatcgcgctcgacgagcccacaaccaacctggacgac
gacaacatcgagtcgctcgccaaggcgctcgccaatatcatccaggagcgcgcaacacag
cgcaacttccagctcattgtcatcacgcacgacgagaagtttctgcgcgccatgaacgcc
gtcgacttcaccgaccactattataaggtgatccgcaacgagcggctcaactccaccatt
aacaaggtccagatcagccagctcgacgattag
DBGET
integrated database retrieval system
