Ogataea parapolymorpha: HPODL_03113
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Entry
HPODL_03113 CDS
T08137
Name
(RefSeq) Polyadenylate-binding protein, cytoplasmic and nuclear
KO
K13126
polyadenylate-binding protein
Organism
opa
Ogataea parapolymorpha
Pathway
opa03015
mRNA surveillance pathway
opa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
HPODL_03113
09123 Folding, sorting and degradation
03018 RNA degradation
HPODL_03113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opa03019
]
HPODL_03113
03041 Spliceosome [BR:
opa03041
]
HPODL_03113
Messenger RNA biogenesis [BR:
opa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
HPODL_03113
mRNA cycle factors
Stress granule specific factors
HPODL_03113
Spliceosome [BR:
opa03041
]
Complex C
Other components
Complex C specific factors
HPODL_03113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_occluded
RRM_7
RRM_3
RRM_8
RNA_bind
RRM_2
SUS_EPBD
Motif
Other DBs
NCBI-GeneID:
25772558
NCBI-ProteinID:
XP_013932921
UniProt:
W1Q8Z1
LinkDB
All DBs
Position
VII:<1281508..>1283133
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AA seq
541 aa
AA seq
DB search
MTSSELTESVNPLNVIKMYEDSAVLENLLAVFKNTYNYPEVNCEVLKGNSESPKTVFARF
EEKDHFEKFKEFLEQRDIEYEHVATEHELKKQLPGNLYVRGLLPTTTSDDLVRIFSRYGA
LVSCKIIYDDFGVSKGYGFINFADRIEAQKAIDNLNGVNVDGNHLFVNHHISKRDRLKEL
EMRKLKYTNLYVKNFPDDLTKEKLAQVFGQYGDVESVFLPQGTGNHNRGYAFINFKSHED
AVRAQENLDGFEIAPGYRLQLGKAERRKDRMQNQMNSYKPNYLPFQPQYMPPQPEHSNNL
YPSFIVSPDSNLISTATGLPIAGPQYQDSNLYIIHLPLEFKDQDLYELFAPFGQIMSAKI
MTYPPNDSAVIDEGEEDTESKSREGRSRGFGFVCFNKPLDASKALVSMNGYRVDDSHVLE
VSFAQRKENKFEKGRLHHYNQNHLGNFYNYLNQNFTKRSFSLPASMHSGGFVPMTAPSPS
QVSYSLVDSPGVPQPGSRTMSVPYISYNPYYYYPYPMPPASPFVKEGDTEEEGAEGPPDQ
G
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgtcggagctgacggaatcagtcaatcctctaaatgtcatcaaaatgtacgaa
gactcagccgtgttggagaatctcttggcagtctttaagaatacctacaactatcccgaa
gtcaactgcgaagtgctgaagggcaactctgaatccccgaagactgtcttcgctagattc
gaggaaaaggatcatttcgagaagttcaaggagttccttgaacagcgtgatatagagtac
gagcatgttgccacagagcacgagctcaaaaaacaattacccggaaatctttatgttaga
ggtttactccccacaacgacgtccgatgatctagtcaggatattcagcagatacggagca
cttgtatcgtgcaagatcatatacgacgatttcggagtatccaaaggatacggatttatc
aattttgcggatcggattgaggctcaaaaagccatcgataatctcaatggcgttaacgtg
gatggcaatcatctatttgtcaaccatcacatttccaaaagagacagactcaaagagcta
gagatgaggaaactcaaatacaccaatctttatgtgaagaactttccagacgacttaacg
aaagaaaagttggcacaggttttcggacagtatggagacgtcgagtctgtttttctccct
caaggtaccggaaatcataatagaggctacgcattcattaactttaaaagccacgaagat
gcagtcagagcacaggaaaacttagatggattcgagatcgctcccggatatagactacag
ctcggaaaggctgagcgaaggaaggatcggatgcaaaaccagatgaatagttataaacca
aactatctcccgttccaaccacagtatatgcctcctcagccagagcattccaacaatctt
tacccctctttcattgtttcgccagattcaaacctcatttcgactgcaaccggtcttcca
atagcaggtccacaataccaggattcaaacttgtacataatacacctgccgttggaattc
aaagaccaagacctttacgaactatttgcaccttttggccaaatcatgtcagccaaaatc
atgacatacccaccaaacgattcggcagtgattgatgaaggagaagaggacacagaaagc
aagtcccgtgagggacgctctagaggatttgggtttgtctgctttaataaacctctagat
gcatcaaaagcattggtgtcgatgaacggatatcgtgtggatgattcccatgttctggaa
gtctcctttgctcaaagaaaggagaacaaatttgagaagggaaggttgcatcattataat
caaaatcaccttggcaacttttacaattatctgaatcagaatttcaccaagcgaagcttc
agccttccagcaagcatgcacagtggagggttcgttccaatgacagcaccttccccatct
caggtttcttattctctagttgacagtccaggagtaccacagcctggttctcgaacaatg
tcggtgccttacatttcttacaatccatactattactatccatacccaatgcctcctgct
tcgcctttcgtcaaagaaggcgatacggaagaagagggagcagaaggcccaccagaccaa
ggttag
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