Ogataea parapolymorpha: HPODL_03236
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Entry
HPODL_03236 CDS
T08137
Name
(RefSeq) Protein that forms a complex with Spt4p
KO
K15172
transcription elongation factor SPT5
Organism
opa
Ogataea parapolymorpha
Pathway
opa03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
HPODL_03236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opa03021
]
HPODL_03236
03019 Messenger RNA biogenesis [BR:
opa03019
]
HPODL_03236
Transcription machinery [BR:
opa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
HPODL_03236
RNA polymerase I system
HPODL_03236
Messenger RNA biogenesis [BR:
opa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
HPODL_03236
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CTD
Spt5_N
Spt5-NGN
KOW5_SPT5
KOW4_SPT5
KOWx_SPT5
KOW1_SPT5
KOW
KOW2_Spt5
DUF4388
Motif
Other DBs
NCBI-GeneID:
25772677
NCBI-ProteinID:
XP_013933052
UniProt:
W1Q997
LinkDB
All DBs
Position
VII:complement(1496880..1499681)
Genome browser
AA seq
933 aa
AA seq
DB search
MSEETTNPEEMRVGNADTQPHDEPSLSKQEEDTVKHNHEDDEEEGEFEDVNLDEEAEDDE
DEDEDEDDDDEALRGRKKRRGNQFLDVEAEVDDDEEEDEDDEDAEILRNEFLADDQAHDE
TGVVSDRLHRKLDRSREKLDEQDAQALADQFKARYGRSASSRYMGSTTNVSQRLLLPSVD
DPLIWGIRVRNGLEKELVKQIYARMLNKRYTDVFSAFQRDNFSGYVYIEARRLDAVNQII
QGLPGMYANNKVLVPIEEYPDLLRPGRSNEVQLQPGSYVRIKVGKYKGDLGIVDNLAEND
LEVRVKLVPRLDYGKSQGSLDSGKGRRGPASSKFRPPQRLFSEIEASQNDPEHLSTARRE
RGYYIYRNEEFIDGFLYKDVKIQQVETRNVKPTLHELTLFNSGSSSEGIDLQSIASSLKD
ASDKAIVFQPDDRVEIVSGEQAKMKGKVVSAPEAKIARVQLEGNDDREVNNSIVEVPTST
LRKIFLPGDHVTVIYGVHSNESGLIVKVEENQVTLVSDQTKKDITVFPNYLMKSIDSSTN
STQTGAFELFQLVKLNSQSVGMVIRAEKEVFTVLCTDGRVVKVEPKAIQSPLELNKMTEK
TTDRNGLEIAVGDVVKEVSGERREGNIVHIYLSHLFLKSKNVIENNGIIVVDATEVQTVS
NKGSILSTFKAPDLNKMNPDRLMPPPAAPIVASKFGGRDITLNQNVSVRKGPYKGKKGIV
KDANGEVARVEMHNPAKIIPINKSDLLFETRPGQFVPYEQYMENYRGRRPGAAFSSGGAP
NGGPFRGNGPELGPGGGRTPAWGSGGKTPAWGSGGKTPAWGSGGKTPAWGNGGKTPSWGS
GGKTPVWNSGGKTPAWNSGAKTPAWNSGGKTPAWNSGGKTPAWNDGSGSVWGGRSAWQPD
TETPRENEWGVSPAVGDWTAPTPAKDDDDYHPE
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggaaactaccaatcctgaggaaatgcgcgtcggcaacgccgatacccaacct
catgacgagccttccttgtcgaagcaggaggaagataccgtgaaacacaatcatgaagac
gatgaagaagaaggggaatttgaggacgtcaacttggatgaggaagccgaggatgacgaa
gacgaagatgaagacgaagatgacgacgatgaagcactccgtggacgaaagaaaagaagg
ggtaatcagtttctggatgttgaggccgaagtcgatgatgatgaagaggaagatgaggat
gacgaagatgctgagatacttcgtaatgagttcttagcagacgaccaagcacacgatgaa
accggtgtggtgagcgatcgactgcacaggaagctggatcgttcgagggagaaacttgac
gaacaggatgcacaggctttagcagaccagttcaaggcgagatatggtcgttctgcatcg
tcccgttatatgggatcaaccacaaatgtgtctcagcgtttgttgctgccatccgttgat
gaccctttgatttggggtattcgtgtcagaaatgggctggagaaagagctggtcaaacaa
atttatgctcgtatgttgaacaagagatacacggacgttttcagtgctttccaaagagac
aacttcagtggttacgtttacatcgaagctcgcagactggatgctgtgaatcaaattatc
caaggcttgcctggaatgtacgcaaacaacaaggttcttgttccaattgaggagtatccg
gatttgcttcgtcctggaagatcaaatgaagttcagctgcagccaggatcatatgtgcgt
atcaaggttggaaagtataaaggggatttgggaatcgtcgataatctggccgaaaacgat
ttggaagtgcgagtcaagttagttccaagactggattatggtaaatcacaaggtagtctg
gattctggaaagggaagacgtggaccggcaagctcgaaatttaggccaccacagagactt
ttttctgagattgaggccagtcaaaacgatcctgaacacctgtctactgctagaagagaa
agaggttactacatctaccgaaatgaggagttcatcgatgggttcttgtacaaagatgtc
aagattcagcaagtggaaaccagaaatgtcaagccaactctgcatgaattgacgcttttc
aactctggaagcagctcagagggcattgatttgcaatcaattgcctcttccttgaaggat
gctagtgacaaggccattgtgtttcagcctgacgacagagtggagattgtcagcggtgaa
caagctaagatgaagggtaaggtggtttctgcgccagaagctaaaattgccagagttcag
ttggagggtaatgacgaccgagaggtgaacaattccatcgtggaggtgccaacttcgacg
ctcagaaagattttccttcctggtgatcacgtgactgtgatctatggtgtccattcgaat
gagagcggactgattgtaaaggttgaggagaatcaagttacgcttgtttccgaccagact
aagaaagacattactgtgttccctaactatttgatgaagtccatcgattcctcgaccaac
tcgacgcaaacgggagcttttgagctattccaactggtcaagctcaactcgcaatctgtt
ggaatggttattcgggcagagaaagaagtgtttacggtactgtgcactgacggacgggtt
gtgaaggtggagcccaaggcgatccaatctccattggaactcaataagatgaccgaaaag
acaaccgacagaaacggtctggaaattgcagtcggagacgtcgtcaaagaagtgtcgggc
gagagaagagagggaaacattgtgcatatttacctttcgcatcttttcttgaagtccaag
aacgttattgaaaataatggtatcatagtggttgatgccaccgaagttcaaactgtgtcc
aataagggctccattttgtcaacattcaaagccccagatctcaataaaatgaatccagac
cgtctgatgcctcctcccgctgctccgatagttgcttcgaagtttggtggccgtgatatc
actcttaaccagaatgttagtgtcagaaagggtccttataagggtaagaagggtatcgtg
aaagatgcaaatggagaagttgctcgtgttgagatgcataatccggccaaaatcatccca
atcaacaaatcagatctgctttttgagactcgtcctggccagttcgtgccgtacgaacaa
tacatggaaaattacaggggcagacgtccaggcgcagcattttcatctggaggtgctccg
aacggtggtccatttcgcggtaatggtcctgaactaggcccaggaggcgggagaactcca
gcctggggtagtgggggcaagactccagcttggggtagcggtggtaaaactcctgcttgg
ggaagtggtggtaaaactcctgcctggggtaacggaggaaaaacaccatcgtggggttct
ggaggaaagaccccagtctggaactctggtggaaaaacccctgcttggaactcgggcgca
aagacgccagcatggaactctgggggcaaaacgccagcatggaacagtggaggcaagact
cctgcgtggaacgatggttctggctctgtgtggggaggacggtctgcttggcagcctgac
accgagactcctcgtgagaacgagtggggcgtttctcctgcggttggagattggacggct
cctactcccgccaaagatgacgacgattaccatcccgagtaa
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