Ogataea parapolymorpha: HPODL_03264
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Entry
HPODL_03264 CDS
T08137
Name
(RefSeq) Essential DEAH-box ATP-dependent RNA helicase specific to the U3 snoRNP
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
opa
Ogataea parapolymorpha
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
opa03009
]
HPODL_03264
Enzymes [BR:
opa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HPODL_03264
Ribosome biogenesis [BR:
opa03009
]
Eukaryotic type
90S particles
Helicases
HPODL_03264
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
Helicase_C
OB_NTP_bind
HA2_N
DEAD
AAA_22
nSTAND3
ATPase
AAA_19
AAA_23
Motif
Other DBs
NCBI-GeneID:
25772704
NCBI-ProteinID:
XP_013935045
UniProt:
W1QD25
LinkDB
All DBs
Position
IV:complement(411014..414562)
Genome browser
AA seq
1182 aa
AA seq
DB search
MGRKYNGQALSFTDENNEQEIEEGSEEPQAIAILEREKVKRKRKLKESLLEQHKEKLSKQ
KKKRLDKYIEHQMKREEREILLQKLSETRIDSSVLKSAKLIGTGTHQTKRERFMEALEKE
RKGNGDKKTQEILFEPRTVKEWDHEEEQVKHTDTQTEIKNKILISTNLASGFEFASHKKA
PKKKQTKNYSWRVRLELERSKKKADEDKLDFASDDDDDDDDDDDDDVVSCDVEETGENSE
NVKKQARKEEEEEEEEEEEEEEEEEEEEEEEMVENNKAYSKRAQSFKEWAEAQVKKLEGI
PEFVTPLAPQKAYTPLVRQEDLDDGLDRDFIPINEELQRKIVTLDVQRDDSVQKTRMQLP
VFEEEHRIMEAIHHNDCVIICGETGSGKTTQVPQFLFESGYGSPDSETPGMIGITQPRRV
AAVAMAERVGRELGNYKKRVGHQIRFDASVGEETSIKFMTDGVLLREMMSDFLLTKYSAL
IIDEAHERNINTDILIGMLSRVMKLRRDWSCKDPAKYRPLKLIIMSATLRVSDFSENKSL
FSSPPPIINVQARQYPVSIHFNRRTAFNYNEEAFRKTCKIHSKLPPGGILVFLTGKGEIN
EMVKRLRKRFPFKKGKSYDDVAEVKVDSRNADMEAEEVDFSVNDMIDDLSEKYSNEEDEE
EEEEEEGFDETLEEGQTAEDPLYVLPLYSLLPTKEQMKIFEHPPKGARLCVVATNIAETS
LTIPDIRYVVDCGRSKERTFNEATGVQSYEINWISKASADQRAGRAGRTGPGHCYRLFSS
AVYESEFAQFSKPEILRMPVESVVLTMKSMGIDNITNFPFVTPPTRDSLRKAEKLLQHLG
ALDDRMIITKLGQRMSRFPLSPRFAKMLLVANQQGCLPYIIAVVSGLSVGDPFISESEII
PRGEEDDENEWRKQQLAKFNNSRQLFTKLDKFSDGLQLLSAICAQDHIPRADREKFFENN
FLRPKIMDEIVKLRKQLTYIVKVNLSKESIAASSLVKDEELMLSLPTKVQVEAIKQMITA
GFIDQVAVRADIVDKNVKIPNNAPITAIQYLTLMPTSESDSDHFVYIHPNSVLSKCGELP
PSYLVYQSLTTNNASATSKLRMHPLTDIGGRALANVAAMSGLITYSKPLGHPYAPKEISQ
TERECYVVPRMGANIGTGGVGWDLPAMKVRQSKVGGNWVIKR
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atggggcgaaagtacaatggtcaagcactgtctttcaccgatgagaataatgaacaagag
atagaagaagggagtgaagagccgcaagccattgcaatcctggagcgcgagaaggtcaag
agaaaaagaaaactgaaagaaagcttactagaacagcataaggagaagctttcaaagcaa
aaaaagaaacggcttgacaagtatattgagcaccagatgaaaagagaggagagggaaatc
cttcttcagaagctcagcgagactaggatagattctagcgttctcaaatctgcaaaactt
ataggaacaggaactcatcaaaccaaacgagagcgctttatggaagcgctggagaaagag
aggaagggaaatggagataaaaaaacacaggaaattcttttcgagccgagaacggtgaaa
gaatgggaccatgaagaggaacaagtaaaacatacggacactcaaaccgagatcaaaaat
aaaattttgatttcaacgaatctagcatctggctttgaattcgcaagccataaaaaggca
cccaagaagaaacaaacaaaaaattatagctggagggtcaggctcgagctcgaacggtcg
aagaaaaaggctgacgaggacaaactggattttgccagcgacgatgatgatgatgacgat
gatgatgacgatgatgatgtagtcagttgtgatgtcgaggagaccggagaaaactcagaa
aatgtaaagaagcaagcaaggaaagaggaagaagaagaagaagaagaagaagaagaagaa
gaagaagaagaagaagaagaagaagaagaagagatggtggaaaacaataaggcatacagc
aaacgtgcacagagtttcaaagaatgggctgaagcccaggtcaaaaaattggaaggtata
ccagaattcgttacacccttagcaccccaaaaagcctacacgccgttagttcgacaagaa
gatctagatgatggtttggacagagatttcattccgattaatgaggagctacaaagaaaa
atagtcactttagatgttcaaagagatgacagtgtacagaagacgagaatgcagctgccc
gtttttgaggaggagcacagaatcatggaagcaatacatcacaatgattgcgttattata
tgtggtgagacaggatccggtaagaccactcaggttccacagttcctttttgagtctggt
tatggaagtccagattctgaaactccgggtatgattggaatcactcaaccaagaagagtt
gccgcagttgctatggcagaaagagttggacgggaacttggcaactataaaaaaagagtt
ggacatcaaataaggtttgacgcctcggttggcgaagagacatctatcaaattcatgact
gatggtgttcttttgagagagatgatgtcagattttcttttgacaaagtattctgcatta
atcatcgatgaggctcatgaaagaaacatcaacactgacatcctcataggaatgttgagc
agggttatgaaacttcggagagactggagctgcaaagatccagccaaatacaggccatta
aaactgattatcatgtctgccaccctaagagtgtcagactttagcgagaataagagccta
tttagttcaccaccgccaatcataaacgtgcaagctcgacagtatcctgtctctattcat
ttcaacagaagaacagcattcaactataacgaagaggccttcagaaaaacttgtaagatt
cactcgaagcttccacccggtgggatattggtttttttgacaggaaaaggagaaatcaat
gaaatggtcaagcgactgaggaagcgatttcctttcaaaaaagggaagagctatgacgat
gttgcagaagtcaaagttgattccagaaatgctgatatggaagctgaagaggtagacttt
tctgtcaatgacatgatcgacgacctcagtgagaaatactcgaatgaagaagatgaggag
gaggaagaagaagaagaaggtttcgacgaaactttagaggaaggacaaacggcagaagac
ccgctgtatgtactacccctctattccttgcttcctacaaaagagcagatgaaaattttt
gagcatcccccaaagggtgcacggctgtgcgtcgtcgctaccaatatcgcagaaacatcg
ctaacaattccggacattagatatgtggttgattgcggaaggtcgaaggagagaactttc
aacgaagcaacaggagttcaatcatatgaaatcaactggatctccaaggccagtgcagat
caacgtgctggaagagccggaagaacaggaccgggtcactgttacagactattctcttca
gcagtctatgagagcgaattcgcccaattctccaaacctgagattcttagaatgccggtg
gagagcgttgttttgacgatgaaaagcatggggatagataatatcaccaatttcccattt
gtcacaccgcctactagagactctcttcgaaaagccgaaaaactgcttcagcatttaggt
gcactggacgatcgcatgataataaccaagctgggtcaaagaatgagccgtttcccgcta
agcccccggtttgctaaaatgctcctcgtggcgaatcagcagggctgtttgccatatatc
attgctgtggtttctggcttatcagtgggtgacccgtttattagcgagtcagaaattatt
ccaaggggagaagaagatgacgagaatgagtggaggaaacaacaattggcgaagttcaac
aactcacgccaattgttcaccaaactagataaattcagtgacggattacaattgctgtca
gcaatttgcgcacaagatcatatccccagggctgatcgtgagaagttttttgaaaacaac
tttctgagacccaaaatcatggatgaaatagtgaaactgagaaagcagcttacttacatc
gttaaagtgaacctcagcaaagagtctatagctgcttcttctctggtcaaagatgaagaa
ctaatgctcagtttacctacgaaggtccaggtggaagcaatcaaacagatgataacagca
ggttttatcgatcaggttgccgtgcgcgcagacatcgtggataaaaatgtcaagataccc
aacaatgcaccaattacggcaattcaatacctcactttgatgcccacaagtgaatcagat
tcggaccactttgtttatattcatccaaattccgttctatccaagtgtggtgaactgcca
ccatcttacctagtttatcagtcacttaccaccaacaatgcatctgcaacaagcaaatta
agaatgcacccgcttacagatatcggaggtcgcgcactggcaaatgtggccgccatgtct
ggtttgataacatactctaagccattaggccacccatatgctccaaaggagatcagtcaa
acagagagagagtgttatgttgtacctagaatgggagccaatataggaaccggtggagta
ggttgggacctcccggcaatgaaggttcgccaaagcaaagttgggggaaattgggtcatc
aaacgataa
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