Ogataea parapolymorpha: HPODL_03359
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Entry
HPODL_03359 CDS
T08137
Name
(RefSeq) Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
opa
Ogataea parapolymorpha
Pathway
opa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPODL_03359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opa03019
]
HPODL_03359
Messenger RNA biogenesis [BR:
opa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
HPODL_03359
mRNA degradation factors
5'-3' decay
Lsm complex
HPODL_03359
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
LepB_N
Motif
Other DBs
NCBI-GeneID:
25772799
NCBI-ProteinID:
XP_013935141
UniProt:
W1QDD6
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All DBs
Position
IV:594855..595310
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AA seq
151 aa
AA seq
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MSSGSSSNLEDLYLQSYSFTTTAAIIGSVDRKVFVLLRDGRSVIGVLRTFDQFANLVIHD
GVERIYLDGSRYGESTEPQIFLIRGENVVMMGELDIDKEDEPLEKLTRIDYGAAFGEWKK
AQTEIVERHTIEDKQLRSRGHLTSFLTDEFY
NT seq
456 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtgggtctagttcgaatctggaagacctatatttgcaatcgtactcgtttacg
acgacggctgccattattggctctgttgatagaaaggtgtttgtgctgttgagagacggc
agaagcgttattggcgtgctgagaacgtttgaccagtttgccaaccttgtcattcacgac
ggcgtggaacggatttatctggatgggtcgcggtacggcgagtcgacggaaccgcagata
ttccttatcagaggcgagaatgttgtcatgatgggcgaattggacatcgacaaggaggac
gagccgcttgagaagctgacgagaatagactacggggccgcctttggcgagtggaaaaaa
gcacaaacggagatcgtggagagacacaccatcgaggacaagcagctgagaagcaggggc
catctgacgtcgtttttgaccgacgaattctactag
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