KEGG   Ogataea parapolymorpha: HPODL_03359
Entry
HPODL_03359       CDS       T08137                                 
Name
(RefSeq) Sm-like protein LSm1
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
opa  Ogataea parapolymorpha
Pathway
opa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:opa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HPODL_03359
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:opa03019]
    HPODL_03359
Messenger RNA biogenesis [BR:opa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     HPODL_03359
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     HPODL_03359
SSDB
Motif
Pfam: LSM LepB_N
Other DBs
NCBI-GeneID: 25772799
NCBI-ProteinID: XP_013935141
UniProt: W1QDD6
LinkDB
Position
IV:594855..595310
AA seq 151 aa
MSSGSSSNLEDLYLQSYSFTTTAAIIGSVDRKVFVLLRDGRSVIGVLRTFDQFANLVIHD
GVERIYLDGSRYGESTEPQIFLIRGENVVMMGELDIDKEDEPLEKLTRIDYGAAFGEWKK
AQTEIVERHTIEDKQLRSRGHLTSFLTDEFY
NT seq 456 nt   +upstreamnt  +downstreamnt
atgtcgagtgggtctagttcgaatctggaagacctatatttgcaatcgtactcgtttacg
acgacggctgccattattggctctgttgatagaaaggtgtttgtgctgttgagagacggc
agaagcgttattggcgtgctgagaacgtttgaccagtttgccaaccttgtcattcacgac
ggcgtggaacggatttatctggatgggtcgcggtacggcgagtcgacggaaccgcagata
ttccttatcagaggcgagaatgttgtcatgatgggcgaattggacatcgacaaggaggac
gagccgcttgagaagctgacgagaatagactacggggccgcctttggcgagtggaaaaaa
gcacaaacggagatcgtggagagacacaccatcgaggacaagcagctgagaagcaggggc
catctgacgtcgtttttgaccgacgaattctactag

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