Ogataea parapolymorpha: HPODL_03534
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Entry
HPODL_03534 CDS
T08137
Name
(RefSeq) Pseudouridine synthase
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
opa
Ogataea parapolymorpha
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
opa03016
]
HPODL_03534
Enzymes [BR:
opa01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
HPODL_03534
Transfer RNA biogenesis [BR:
opa03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
HPODL_03534
Prokaryotic type
HPODL_03534
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TruD
PUS7L_N
Motif
Other DBs
NCBI-GeneID:
25772972
NCBI-ProteinID:
XP_013935329
UniProt:
W1QF70
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Position
IV:905360..907198
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AA seq
612 aa
AA seq
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MKRKLADIERQKADSGITEEHVGITEYICKGGDRIAGLLKQRYTDFLVNEIGLDGKVIHL
EDLGFPEEEPEKDTDSEKSARGAFNIPEDKKSDLIAILGESDVEKLLQIPVSGEKLVTEK
VFESKDDRTKLHRLVRELFKNRLESLTMATNQFEISLSSKNSKRRTVINHNLGDRKRYLH
AVLYKENKETMEVAGLLAKFLNIPVKNVKYAGTKDRRGVTVQKISLERISVERINNLNRA
LRGFQIGGFSYADEPLRLGDLRGNEFIITIKDVTLNGETLDIPTLEQKLAPIFESIDKYG
FINYFGMQRFGTFSVSTHEVGKCLLQSEWKKAGELILSEQEVVLPDSVEARRIWKETRDA
SQALKKMPRRCSAEFSILSRLEHDQKGEDGEYSENSYFKALMGIPRNLRIMYGHAYQSYV
WNMVASARMRLFGMEVVAGDLVIDNSVTVEQDDDFEEDVKKETFVRAKPVTQEDVDNKTY
SIHDIVLPTPGFDVLYPENETLRQTYVDVMAKDGLDPFKMSRRVREFSLAGSYRHVFGRV
DGLKYYFCKYDANTDSLVRTDLELLRLRQQGKEEPRLISRPEGSKVALVVQMQLGVSAYA
TMALREIIDGQQ
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggaagctcgccgatatagagcgccaaaaagctgactcgggcatcaccgaagag
cacgtaggcattacagaatacatatgcaagggaggcgatagaattgctgggcttttgaag
cagagatacaccgatttccttgtcaatgaaataggtttggatggaaaagttatccatctg
gaggatttggggttccctgaagaggaacccgagaaagataccgactcagaaaaatcagca
agaggcgcattcaatatccccgaagacaaaaaatctgatttaatcgccattctaggagaa
tcagacgttgagaagcttttgcagatcccagtctctggtgagaaactcgtcactgaaaag
gtatttgagagcaaggatgacagaaccaaattgcataggcttgtgcgcgaactgttcaaa
aaccgtctcgagagcctgaccatggctaccaatcagtttgaaatttcgctgagctcgaaa
aatagcaagcggcgaaccgtgataaatcacaacttgggcgaccgcaagcgctatttgcat
gctgttctatacaaggagaataaggagaccatggaagttgctgggcttttagcgaagttt
ctcaacattcctgtaaaaaacgtgaaatatgcgggaactaaagacagacgtggagtgacg
gtgcaaaagatatctctggaacgcatttcagtggaaagaattaacaatctaaatagagct
ctacgcgggtttcagataggcggctttagctatgccgatgagccactaagattgggtgat
ctccgagggaacgaatttatcatcaccatcaaggatgtcactcttaatggagaaacactt
gacatcccaactctagaacaaaagctcgctcctatattcgaatccattgacaaatatggc
tttatcaactatttcggaatgcagagatttggcacattttcggtctcgactcacgaggtt
ggcaaatgcctgcttcaaagtgagtggaaaaaagcaggagaattaattttgagcgagcag
gaggttgtgctacccgattccgttgaggctcgtagaatctggaaagagaccagggacgca
tcgcaggcacttaaaaagatgccccgtcgctgtagtgcggagttctccattttgagccgt
cttgagcacgaccaaaagggcgaggacggagagtactctgaaaattcttatttcaaagct
ctaatgggcattcctcggaatttgaggatcatgtacggccatgcttaccaatcttatgtc
tggaacatggtcgcgtctgcaagaatgagactgtttggcatggaagttgttgcaggtgat
ctcgtaatcgacaattccgtgacggtggagcaggacgacgacttcgaggaagacgtcaag
aaagaaacgtttgttcgtgccaagcctgtcacccaggaggatgtcgacaacaagacatac
tccatccatgacatagtgctgcccacaccaggatttgacgttctctacccggagaacgag
accctgcgccagacatatgtggacgtgatggccaaagacgggctcgatccgttcaagatg
tcgcgccgcgtgcgcgagttctcacttgcaggctcctaccgccacgtttttggccgcgtg
gatggcctcaagtactacttttgcaagtacgatgccaacaccgattccttggtccgcaca
gatctcgagctcctgcgcttacgtcagcaaggaaaagaggagccacgcttgatttcgagg
ccagagggttccaaagtggcgctcgttgtgcagatgcagctgggagtgtctgcgtatgcc
actatggccctcagagagattattgatggacagcaatga
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