Ogataea parapolymorpha: HPODL_03649
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Entry
HPODL_03649 CDS
T08137
Name
(RefSeq) ATP-dependent RNA helicase DOB1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
opa
Ogataea parapolymorpha
Pathway
opa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPODL_03649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opa03019
]
HPODL_03649
03041 Spliceosome [BR:
opa03041
]
HPODL_03649
03009 Ribosome biogenesis [BR:
opa03009
]
HPODL_03649
03016 Transfer RNA biogenesis [BR:
opa03016
]
HPODL_03649
Enzymes [BR:
opa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HPODL_03649
Messenger RNA biogenesis [BR:
opa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
HPODL_03649
Spliceosome [BR:
opa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
HPODL_03649
Complex C
U4/U6.U5 tri-SnRNP related factors
HPODL_03649
Ribosome biogenesis [BR:
opa03009
]
Eukaryotic type
Pre-60S particles
Helicases
HPODL_03649
Transfer RNA biogenesis [BR:
opa03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
HPODL_03649
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
25773085
NCBI-ProteinID:
XP_013935450
UniProt:
W1QE84
LinkDB
All DBs
Position
IV:complement(<1092223..>1095360)
Genome browser
AA seq
1045 aa
AA seq
DB search
MDLFGAFENPDLENIVPEELPKADDPKGIKRTNSESKNGSQKKPKVEKKEQEENGEKVVP
IVADTLEIEASREVDASSGLLASTDTDASKVKLRHQVRHQVAVPPGYDYVPIGQHKRKTE
ARTYPFTLDPFQDTSISCIDRQESVLVSAHTSAGKTVVAEYAIAQSLRDKQRVIYTSPIK
ALSNQKYRELQADFGDVGLMTGDVTINPDAGCLVMTTEILRSMLYRGSEIMREVAWVIFD
EVHYMRDKSRGVVWEETIILLPDNVHHVFLSATIPNAMEFAEWICKVHNQPCHVVYTDFR
PTPLQHYLFPADGEGIHLVVDEKGTFREENFQKAMASISNKMGDDPGAIETKNGKSWKGG
VKEGKSDIYKIVKMIWMKKYNPVIVFSFSKRDCEALAMKMSKLDFNTDEEREMLTKIFNN
AISILSDDDKELPQIKHILPLLRRGIGIHHSGLLPILKEIIEILFQEGFLKVLFATETFS
IGLNMPAKTVVFTSVRKWDGNGFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQ
VAKGMVKGVADRLDSAFHLGYNMILNLMRVEGISPEFMLGSSFFQFQNSISEPELKKQLA
KYEQELDSIVIDDMENIKEYYELQKQLDQYNEDVRKIVTHPGNILPHLKGGRLVEVNING
MDYGWAIVIDFSKRNNKRNQAQYSDHESYVVNVFVNTMFVDSPVNLIKPFQVQLVEGIRP
AKEGEETRSEVIPITLDSIKKISSCRSILPQDMKNSQARKTLRKALKEIVKRHPDGLPIL
DPVTKMHIKDEEFKVLLRKIEILESKLHSNPLAQSARLKELYDQYSHRMSIVDKINETKK
KISEVQSLIQMDDLKHRKRVLRRLGFTTQDDIVEMKGRVACEISTGDELLLTELIFNGTF
NELDPSQCAALLSCFVFQERTKVTPRLKPELAEPLKALKEMASKIAKVCRECKLEVVEKD
YVESFKPDLMEVVYAWCQGASFTQICIMTDVYEGSLIRSFRRLEELIKQLVDAARTIGNV
ALEEKLTRSAELIHRDIVSAASLYL
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggatctctttggggcctttgaaaatccagacctggaaaacattgttccagaagaactt
ccaaaagctgatgacccaaagggaattaaaagaaccaactcagaatccaagaacggatca
caaaagaagccaaaagttgaaaaaaaggaacaagaggaaaatggcgaaaaagtagtccct
atcgtggcggacacgttggaaatcgaagcttcccgagaggtcgatgcctctagtggactg
ctcgcatcaacagatacagacgcctcgaaagtcaagttacgacaccaggtgcgacaccag
gttgcagtgcctccaggatacgactacgttcccattgggcaacacaaacggaaaactgag
gctcgtacatatccgttcacacttgatcccttccaagacacatccatttcctgtatagac
cgtcaggaatctgtcttagtcagtgctcacacctctgctggtaagactgtggttgcagaa
tacgctattgcccaatcgcttagagacaaacaacgtgtaatttatacatctccaatcaag
gctttgagcaaccagaagtaccgtgaattacaagctgattttggtgatgttgggttaatg
actggagatgtgacgatcaatcctgatgccggatgtttggtgatgacgactgaaattctg
agatccatgctttatagaggttctgagattatgagagaagttgcctgggttatcttcgac
gaggttcactacatgcgtgacaagagcagaggtgtcgtttgggaagaaaccatcattctg
ctccccgacaatgtccatcacgtgttcctatctgctaccattccgaacgctatggagttt
gctgaatggatatgcaaagttcacaaccagccttgtcacgtggtctacacagatttccgc
cccactccattgcagcattaccttttccctgctgacggggaaggcatacatctggttgtt
gatgaaaagggaacttttagagaggagaacttccagaaggccatggcatcgatttcaaac
aaaatgggagacgacccaggagctattgagacgaaaaatggcaagtcctggaaaggaggt
gtcaaggaaggaaagtctgacatttacaagatcgtcaagatgatttggatgaaaaaatac
aaccctgtcattgttttctcgttcagcaaacgtgattgtgaggctcttgctatgaagatg
tcgaagcttgattttaatactgatgaggagcgcgagatgctcaccaagatcttcaataat
gcgatcagcattctttccgacgacgacaaagagttaccgcagatcaaacacattctgccg
ctattgcgtcgtggtatcggcatccaccactctggactgctccctattttgaaggaaatc
attgagattttatttcaagagggatttctgaaagttctgttcgcgacggagaccttttcc
attggattgaatatgccagccaagactgttgtgttcacgtccgtgcgtaaatgggacgga
aatgggttcagatgggtttctggaggagagtatattcagatgtctggacgtgctggtcgt
cgtggtttggatgaccgcggtatagtgattatgatgatcgacgagaaaatggagcctcag
gttgccaagggcatggtgaaaggtgttgctgacaggttggactccgcatttcatttgggc
tacaacatgattttgaacctgatgcgcgtggaaggtatctcgccagaattcatgctgggg
agctcttttttccagttccaaaattcgatttccgagccagaattgaagaaacaacttgcc
aagtatgaacaagagttggattctattgtgattgacgacatggaaaacattaaggagtat
tacgagctacagaaacagctggaccagtataacgaagatgtgcgtaagattgtcactcat
ccaggtaacattttgccccacctgaaaggcggtcgtttggtggaggtgaacattaatgga
atggattacggttgggcaattgtaattgatttctcgaagcgcaacaacaagcgcaaccag
gcgcaatacagcgaccatgagtcttatgtggtgaacgtttttgtgaacactatgtttgtg
gactctccagtgaacctgatcaaacctttccaggtgcaattggttgaaggaatccgccca
gcgaaagaaggagaggaaacgcggagcgaggtaatcccgatcacgttggactccatcaaa
aaaataagcagctgtcgttcaatcttgccgcaagacatgaagaatagccaggcacgcaag
acactgcgcaaggcgttgaaggagattgtgaagagacacccagatgggcttcctattttg
gaccctgtcaccaaaatgcatatcaaagatgaggagttcaaggttttgctccggaagatc
gaaattctggaaagcaaactccactctaacccgcttgcgcaatctgcacgactcaaggaa
ctgtacgaccaatattcgcatcggatgagcattgtggataagatcaacgagacaaaaaag
aagatcagtgaagtgcagtctctcattcaaatggatgacctgaaacaccgcaagagagtg
cttagacgactagggttcacgacgcaagatgatattgttgagatgaagggccgtgttgca
tgcgagattagcacgggagacgaattgctgctgaccgagttgatattcaacggaacgttc
aacgagctggatccatcacagtgtgcggccctattatcgtgcttcgtctttcaggaacgt
accaaggtgacccctagactcaagccagagcttgcggagccacttaaggcgttgaaggag
atggcctcgaagattgcaaaagtttgcagagagtgcaaactggaggttgttgagaaagat
tacgtggagtcgttcaagccggatttgatggaagtggtttatgcttggtgtcagggagcc
tcgttcacgcagatatgtattatgacagacgtttacgaaggttcgctgatcagaagtttt
aggcgtttggaagagttgatcaagcagttggtggatgctgccagaaccatcggaaacgtt
gccttggaggaaaagctgaccaggtcggctgagttgattcacagagacattgtttctgct
gcatcgttgtatttgtag
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integrated database retrieval system
