KEGG   Ogataea parapolymorpha: HPODL_03730
Entry
HPODL_03730       CDS       T08137                                 
Name
(RefSeq) U2 snRNP component prp10
  KO
K12828  splicing factor 3B subunit 1
Organism
opa  Ogataea parapolymorpha
Pathway
opa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:opa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    HPODL_03730
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:opa03041]
    HPODL_03730
   03036 Chromosome and associated proteins [BR:opa03036]
    HPODL_03730
Spliceosome [BR:opa03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    HPODL_03730
 Complex B
    HPODL_03730
 Complex C
   U2 SnRNP specific factors
    HPODL_03730
Chromosome and associated proteins [BR:opa03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    HPODL_03730
SSDB
Motif
Pfam: PPP2R1A-like_HEAT HEAT_EZ TOR1L1_N HEAT HEAT_EF3_N HEAT_ECM29 Vac14_Fab1_bd CEP104-like_TOG Htt_N-HEAT_1 SF3b1 Cnd1 RRP12_HEAT XMAP215_CLASP_TOG HEAT_Maestro_2
Other DBs
NCBI-GeneID: 25773164
NCBI-ProteinID: XP_013935535
UniProt: W1QEG5
LinkDB
Position
IV:complement(1220728..1224012)
AA seq 1094 aa
MSQKVIQFDDPSSENGHRAKLTGAYSIPEQFQRELTEEAESYEDPLTRQIQKKAISAREN
SYQQRKYDTLHKLEDVGDGSKSSSYREAMTNRFKDKQKQQQEGEIAQESQQLRKRDKTPP
RRERKRRWDVKDPDAEAEEPKRKSRWEEEPEEKPPPIPVIDGIPLTEENLNILLPSGFHK
IQPPADYKPDLSIPPDLTSFNSLTNVDQYMIPDESTLRQEFKFFNPQLIHDVPGLKEIQF
FKETDMKVFGKLITTKDTNLDTLSNDEKKEIQCMKLILMIKNGSPQVRKVSLRQLQENAR
YFGADHIFNVILPLLMSKSLEDQERHLLVKVVGRVLFRLEELIRPYAHKILVVIMPLLID
EDMVTRLEGREIISNLSKAAGLAHMISVLRPDIDHSDDYVRNTVARTFAVIASSLGIQSL
LPFLRAVCGSKKSWLARHTGVKIVQQIAILMGSSILPYLNGLVGCVSKAITDENLSVRTL
AATAISNLAEASAPYGFDVFEKVLDPLWQGVRRHRGRGLAAFLRAIGYIIPLMDEEYSNY
YTREVFRVLTREFSSPEDEMKRTVLRIVKQCCSMELVDGRLFREGKIIDEFFSNFWNRRT
ALDTRIERMCVDASVSLANKIGPNGVIEHILVPLKDESEAFRRMAVETASKVVTSLGSFD
LDDRTVQRLLDGLLFTFQRQTTDDRVVLNGFGNVLVSLGVRVKPHIMNIMSALLYRLKNK
TPEVRQQAADLIARSSVVLKICGEEDLLVRLSSILYEALGEVYPDVLGSILIALRSVIQN
LGVEMTNPPISQILATLTPILRNRHEKVQETTINLIGDIADKGKEYINHREWMRISFELL
EMLKARKKQIRKSANTTFGLIARAIGPADVLVTLLNNLRVQERQLRVCTAVAIGIVADTC
SPYTVLPAMMNEYRYFDRNVQNGILKSMSFMFEYIGDMGADYVYAVLTLLQDAFTDRDLV
HRQIAATVVKHMALGCAGLGYEDAFVHYLNLIWPNVLETSPHVIIRILESVEAIRVAIGY
GMVMNYVVAGLFHPASKVRHAYWQVHNSMYLNNSDAMVPYYPRLDRVGKELKAEEPRVCF
DKTDYSVKELDLWL
NT seq 3285 nt   +upstreamnt  +downstreamnt
atgtcgcaaaaggtgatccaatttgatgatccgtcgtcagaaaatggacatcgagcaaag
cttactggagcctactcgattccggaacaattccagcgtgaattgaccgaggaagcagaa
tcttatgaagaccctctaacaagacagatccagaagaaggccatttctgcccgcgaaaac
tcgtatcagcaacgtaagtacgacactttgcataaactggaagatgtcggagatggttcg
aagtcttcgagctatcgggaagcgatgactaatcggttcaaggataagcaaaagcaacaa
caagagggcgaaatagctcaagaatcgcagcagctacgaaagagagacaagactcctcct
cgtcgcgaaaggaagcgccgatgggatgtcaaggatcctgatgcagaggcagaggagccc
aagcgtaaatctagatgggaggaagagcctgaagaaaaaccgcccccaataccagttatt
gacggtattccactgacggaggagaatctgaatattctcctgcccagtggtttccataaa
atacagccccctgcagattacaagccggacctcagcattcctccagatttgacttctttc
aactctttgacaaatgtcgaccaatatatgattccggacgagagcacgctgcgtcaagag
ttcaaatttttcaatccgcagctcatccatgatgtccccggtctgaaggagatccagttt
ttcaaagagaccgatatgaaggtctttggcaaactgatcaccacgaaggacacaaatctc
gacactttgagcaatgacgagaagaaagagattcaatgcatgaaactcattttaatgatc
aaaaatggctcgcctcaagttcggaaagtatcattacgacagcttcaagagaacgcgcgt
tatttcggagcggaccacatattcaacgttatacttcctctgctaatgagcaagtctctc
gaagaccaggaacgccacttactggtcaaagtggttggcagagtgcttttccgcctcgaa
gaactaatcagaccctatgcgcacaaaatcctggtggtgatcatgccgttgttgattgac
gaggacatggtcacccggttggaagggcgagagattatttcaaatctatccaaggcagct
ggtctggcacacatgatatctgtcctgcgtccggatatcgatcactcagacgactacgtg
cgaaatacggttgcacgcacgtttgctgtgattgcgtcttcgttggggatccaatcgctg
ctaccatttttgcgggccgtctgcggatccaaaaaaagttggctggctagacacacggga
gtgaaaattgtgcagcagatagctatcttgatgggttcgagcatacttccatacctcaat
ggccttgtgggctgtgtttccaaagcgatcacagacgagaacctcagtgtccgtactctg
gcagccacggccatcagcaatttagctgaggcttctgcgccttatggattcgacgtgttc
gaaaaagttcttgatcctctctggcagggtgtgcgcagacacaggggccgtggactcgct
gcgttcttacgtgctattgggtatattattccactcatggacgaggaatacagcaactac
tatacgcgcgaggtatttagagtgcttacgagagagttttcgtctcccgaagatgagatg
aagaggaccgttttgcggattgtcaagcagtgttgctcaatggagcttgtggacggacgt
ctgttcagagaaggcaagattattgacgaattcttttccaatttctggaaccggcgcacg
gcgctggacacacgaattgagaggatgtgtgtggacgcatccgtttcgcttgccaacaaa
atcggcccgaacggcgtaattgagcacattctggtgcccctgaaggacgaatcggaagcg
tttcggcgcatggccgttgaaactgccagtaaagtggtcacctctttaggttcctttgac
ctggacgacagaactgtgcaaagactgctagatggtttgcttttcactttccagagacaa
accaccgacgaccgcgttgttttgaacggattcggtaacgttcttgtgtcgctaggcgtt
cgggtcaagccgcacatcatgaacatcatgagcgcgttgctctatcgcttgaagaacaaa
acgcccgaggttcggcagcaggctgctgatctgattgcccgtagcagcgttgtgttgaag
atctgcggcgaggaggacctgcttgttcggttgtcgtcgattttgtacgaggcgctcggc
gaggtgtatcctgatgttctgggctcgattttgattgccttgcgcagcgttatccagaac
ttgggtgttgagatgacaaacccgccaatatcgcagatcctagccacgttgactccgatc
ctgcggaacagacacgaaaaggtgcaggagactaccatcaacctgatcggagacattgcc
gacaagggcaaggagtacatcaaccaccgagagtggatgcggatcagtttcgagttgctg
gagatgctcaaagcgcgcaaaaagcagatccgcaagagcgcaaacaccacgttcgggctc
attgcgcgtgccattgggccggcagacgtgctggtgactctacttaacaatttacgggtc
caagagagacagcttcgtgtgtgcactgccgtcgccattggtatcgtcgcagatacatgt
tcgccgtatacggtgctgccggcgatgatgaacgagtaccgctatttcgaccgcaacgtg
cagaacggtattctaaagtccatgtcattcatgttcgagtacatcggcgacatgggggca
gactacgtctatgcggttttgacgctgctgcaggacgccttcaccgaccgcgaccttgtg
catagacagatcgccgcgacggtggtgaagcacatggcactgggctgtgcggggctgggg
tacgaggacgcatttgtccactatttgaacctgatttggccaaatgtgctggaaacctcg
ccgcacgttattattcggattttggaaagtgtggaagccatccgtgttgccatcggatac
gggatggtgatgaactacgtggtggccgggctgttccatcctgctagcaaggtccggcac
gcgtactggcaggtccacaacagcatgtatctgaacaacagcgacgcaatggtgccgtac
tatccacggctggatcgggttggaaaggagctcaaagcagaagagccgcgtgtgtgcttt
gacaaaacagattacagcgtgaaggagctggatttgtggttgtaa

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