KEGG   Ogataea parapolymorpha: HPODL_03738
Entry
HPODL_03738       CDS       T08137                                 
Name
(RefSeq) Single-stranded DNA endonuclease, cleaves single-stranded DNA during nucleotide excision repair
  KO
K10846  DNA excision repair protein ERCC-5
Organism
opa  Ogataea parapolymorpha
Pathway
opa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:opa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    HPODL_03738
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:opa03400]
    HPODL_03738
DNA repair and recombination proteins [BR:opa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     HPODL_03738
SSDB
Motif
Pfam: XPG_N XPG_I 5_3_exonuc DUF3474 Transposase_20
Other DBs
NCBI-GeneID: 25773172
NCBI-ProteinID: XP_013935543
UniProt: W1QFX0
LinkDB
Position
IV:complement(1233942..1236977)
AA seq 1011 aa
MGVHGLWEIVGPTARPVRLEAMAKKRLAVDASIWIYQFLKAVRDVQGNQLINSHIVGFFR
RICKLLYFGIKPVFVFDGGAPLLKKQTISKRREKREGSKETAEQVARRLLAKQLQNRAEG
KPDAPKKPKSKAKTKEVPIDQLQFTEFYEDTNYFDTRDKKQEQTLEKPTPKKENENRIFR
RQDEYDLPHIDSFKVDKNDQRVITDYEYDRLTSDLQDELGGIDLDTIDPKSEEFARLPLS
TQYIVLSHLRLRSRLRMGYTKQQLETLFPNSMDFSKFQIQMVQKRNFLTQKLMNVAGMDE
KEAKSRRIASDRDRIYELQRNENGYTLSIKDDGHSAEKPIDLNSDGEQDEDEDDEEWEDV
IEPVKPVSPMGTAASEPMFVGEVESSENNEDTTMAMIQSLYEYANNNKKNLQKAAEMSEE
EQLRQAVERSKQDYYNMMEQEQQNDAPFDYGAPPPLILTKESLGSNIGKVTESKPVSVPK
FDFKSSILSASKTEEPKSVQPKQEPKPKNDKKKAEETPVWFQTRVSENAYHETGSHEKTE
VDKTEDEKAGLFDYADLEPYLEEDESEDYEDVEEHEAHEPEIIELDPEPQPEPEKTNQAH
DTLERVTVSDQPELKHNSSDDPDGQEAIEAIPTPVGQQAKRETKHSEENMQQEVPKMPEP
LDYVFSDAEEEELEHNLEDEEAAYEKFVDQVGTKKPSSSSSFWSMDDEVQLQESMKKQKR
DADEVTVRMILDIQDMLSRFGLPYITAPMEAEAQCAELLRLGLVDGIITDDSDCFLFGGD
RVYKNMFNEKNFVECYQMEDLERDLGLDRRMLIDLALLLGSDYTEGIKGVGKVAAMEILA
EFGTLESFKHWWLDYQNGIIDESKETTVKRKLRKSLKKTDLYLTPEFPDKRVIEAYLHPE
VDHDKSEFQWGYPNLDKLRTFLMYNVGWGKEKVDTILLPIIQNMNKPQTSIEEFFPVEMI
RRRRDLEMGQRLKNATSKLRNADKNSAETEEQPSKRRRQQKEHDQDHKLGS
NT seq 3036 nt   +upstreamnt  +downstreamnt
atgggtgttcatggactctgggagattgtcggccccacagcgcgtcctgtgcgactcgag
gcgatggcaaagaaacggcttgctgttgacgcctcgatttggatctaccagttcctcaag
gctgtgagagatgtgcagggcaatcaactgatcaactcccatatagttgggtttttccgc
cgaatatgcaagcttctctacttcggaatcaagcctgtgtttgtttttgatggtggcgcg
ccgcttttgaagaaacagaccatcagcaagagacgagagaaaagagaaggcagcaaagaa
accgcagagcaggttgcgcgcagactgctggcaaaacagcttcagaatcgggccgagggg
aagcctgatgcgcccaaaaagcccaaatccaaggccaagaccaaagaagtgcctattgac
caactacagtttactgagttttacgaagacactaattattttgacaccagggacaaaaag
caggaacagacacttgagaaaccgacgcccaagaaagagaatgaaaatcgcatattccgc
aggcaagacgagtacgatctcccacacattgacagcttcaaagtagacaagaatgaccag
cgagtgatcacagattatgagtacgaccgacttacttctgatcttcaagacgagcttgga
ggcattgatctcgacaccatcgacccaaaatccgaggagtttgcccgtcttccactttct
actcagtatatagttctttctcacttgcgactgcgttcgcgtttgagaatgggctacaca
aaacagcaactggagacattattcccgaatagcatggatttttctaaatttcaaattcag
atggtgcagaagcgcaattttctcactcaaaagctgatgaatgtggcgggaatggacgag
aaggaggccaagtcgcggcgtattgctagcgatcgtgatcgtatttacgagctccagagg
aacgaaaatgggtatactttgtcgatcaaagatgatggccatagtgcagagaaacccatt
gatctaaacagcgatggggagcaggacgaagacgaagatgatgaagagtgggaggatgtt
atagagcctgtcaagccggtctctccgatggggactgctgcatctgagccgatgtttgtt
ggcgaggtagagagctcagaaaataacgaggacactaccatggcgatgatccagtcgctg
tacgaatacgcgaataacaacaagaagaacttgcagaaagccgcggaaatgagcgaggag
gagcaattgcgacaggccgttgaacgatcaaaacaggattattataatatgatggaacag
gagcagcaaaatgacgcgccttttgactacggggctcctccaccgttaatattaaccaag
gaatcgcttgggtcgaatataggtaaggtcactgagtcaaagcctgtgtctgtgcctaaa
tttgattttaaaagcagtatactctctgctagcaaaacggaggagcccaagagcgtacag
ccaaagcaagagccaaagccaaagaacgataaaaagaaagcagaagaaactcctgtctgg
tttcagactcgagtttcggagaacgcgtatcacgagacgggaagccacgaaaagactgag
gtagataaaactgaggacgaaaaagccggactgttcgattacgctgatctggaaccgtac
ctggaggaagatgaaagtgaggattatgaggatgttgaagaacacgaagctcatgagcct
gagatcatagagctagatcctgagccacaaccggagccagagaaaacaaaccaggcccat
gacacgctggagcgtgttactgtgagtgaccagccagagctgaagcacaattcctcagat
gaccccgatggccaagaggctatagaagctataccgactccggtaggtcagcaggccaag
agggaaaccaaacattctgaggagaatatgcaacaggaagtccccaaaatgccagaacct
ttggactacgttttttcggacgccgaggaagaggagctcgagcacaaccttgaggatgag
gaagctgcgtacgagaaatttgtggatcaagtcggtaccaaaaagccatcatcgtcttcc
agtttctggtcaatggacgacgaagtgcaacttcaagagagtatgaagaaacaaaaacga
gatgcagacgaggtgaccgtcagaatgattctggatatccaagacatgctctcccggttt
ggcctcccgtacataaccgcgccgatggaggcagaagcccaatgcgctgagcttcttcgt
ctgggattggtggacggcattatcacagacgattcggactgtttcctttttgggggtgac
cgcgtgtacaaaaacatgttcaacgagaagaatttcgttgaatgttaccaaatggaggac
ctggagcgcgatctaggcctggatagaaggatgttgattgacttagctctattattagga
agcgattatacggaaggtattaagggtgttggaaaggttgcagcaatggagattcttgct
gagtttggaacactggaaagttttaaacactggtggctcgactatcaaaatggtattatt
gatgagtccaaggaaacaacggtcaagcgcaagttgcgcaagtcgttgaagaaaactgat
ctatatctgactcccgagtttccggacaaacgtgttattgaagcatatctgcatccggag
gttgaccacgataagtctgagttccaatggggctaccccaacctcgacaagctgcgcact
ttcctgatgtacaatgttggatggggtaaggagaaagtggacaccatcttgctgccaatt
atccagaacatgaacaagccgcagacaagcattgaggaatttttccctgttgagatgata
aggcgccgccgtgatctggaaatggggcagcgattaaaaaatgccacatcgaaattaaga
aatgctgataagaattctgcagagacagaggagcagccttccaagcgacgtaggcagcag
aaggaacacgatcaggaccacaagcttggctcatag

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