Ogataea parapolymorpha: HPODL_03871
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Entry
HPODL_03871 CDS
T08137
Name
(RefSeq) Transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
opa
Ogataea parapolymorpha
Pathway
opa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HPODL_03871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opa03021
]
HPODL_03871
Transcription machinery [BR:
opa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
HPODL_03871
Prokaryotic type
Archaeal type
TFB
HPODL_03871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Sigma70_r4
DUF1485
Motif
Other DBs
NCBI-GeneID:
25773304
NCBI-ProteinID:
XP_013934121
UniProt:
W1QE91
LinkDB
All DBs
Position
V:176598..177614
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AA seq
338 aa
AA seq
DB search
MPSPSERPKGVNLNITLVCPECKVYPPEIVERHSEGDIVCALCGLVLSSRIIDTRSEWRT
FANDDQNGDDPSRVGEATNGALDSDQLSTVISAGVDGNRAAKELNRIQNRSVVDRKDYAL
QSAYSKISQLCDGYQLPRVVQDGAKEVYKLVHDDKMLRGKSQEAIMAASIFFGCRKADVP
RTYNEIWALTNVPKKDIGKVFKIIKQIIQRKDAEQDGLITRRNNNISTTQTNPEDLVGRF
CSHLGLSPQITTSAQHIARTLKELGVLEGRSPTTIAATVIYFSTAIFKQQIPLSRISEKT
GVSEGTIKSSYVHMSAARDKLVDQSWIDSGKVDMSALN
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgccatccgaaagaccaaagggcgtcaaccttaacatcactctggtttgtcca
gagtgtaaggtgtatcctccagagatcgttgagagacacagcgagggagacatcgtctgt
gctctttgcggcctggtgttgagttcgcgaataatagatactcgttctgaatggagaacg
tttgccaacgatgaccagaacggagacgatccatcgcgtgtgggagaggccacgaacgga
gcgctcgattcagaccaactgtctacggtcatcagtgctggagtggacggaaaccgggca
gccaaggagctgaaccggatccagaaccgtagtgtcgttgatagaaaggactacgcattg
cagtcggcgtattccaagatctcgcagctttgtgatggataccaattgccgcgtgttgtt
caggacggcgccaaagaggtgtacaagctggtgcatgacgacaagatgctaaggggaaag
agccaggaggccattatggccgcatcgattttctttgggtgtcgtaaggcagacgtgcct
agaacgtacaacgaaatctgggcgctgacaaacgtgccgaaaaaggatatcgggaaggtg
ttcaagatcatcaagcagatcatccagaggaaagacgcagaacaggatggactcatcact
cgccgcaacaacaatatctccaccacacagaccaatccggaggatcttgtgggccgattc
tgctcgcatttgggtctctcgccgcagatcaccacctctgcacagcacattgcacgcacg
ctcaaggagctgggtgtgctggagggacggtcgcccaccacgatcgccgccacggttatc
tatttttcgacggccatctttaagcaacaaatcccgctgtcgcggatcagcgagaagacc
ggtgtttctgagggaaccatcaagtcgtcgtatgtgcacatgtctgccgcccgcgacaag
ctggtcgaccagtcctggatcgactcgggcaaggtcgacatgtctgcgctcaactaa
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