Ogataea parapolymorpha: HPODL_03919
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Entry
HPODL_03919 CDS
T08137
Name
(RefSeq) SWI/SNF chromatin-remodeling complex subunit SNF5
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
opa
Ogataea parapolymorpha
Pathway
opa03082
ATP-dependent chromatin remodeling
opa03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
HPODL_03919
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
HPODL_03919
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
opa01009
]
HPODL_03919
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opa03021
]
HPODL_03919
03036 Chromosome and associated proteins [BR:
opa03036
]
HPODL_03919
Protein phosphatases and associated proteins [BR:
opa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
HPODL_03919
Transcription machinery [BR:
opa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
HPODL_03919
SWI/SNF complex
HPODL_03919
Chromosome and associated proteins [BR:
opa03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
HPODL_03919
PBAF complex
HPODL_03919
SWI/SNF complex
HPODL_03919
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
Motif
Other DBs
NCBI-GeneID:
25773352
NCBI-ProteinID:
XP_013934172
UniProt:
W1QCM3
LinkDB
All DBs
Position
V:253010..254920
Genome browser
AA seq
636 aa
AA seq
DB search
MFEGSSGGQPPPQQQMTPQMIIQNLMRMDPQQRNAVIMKNPQLQMFLQHYEQQRKAALNQ
SMNPQMQAKIIQQQQQRQIQQQRQQISGQVPGQMPHQIPTPVPAPQVAQKNPGMQAQKRM
VRKRSSAKDPLDPSGTPVGSPVISQGPHPVQNMGYPPGAQSGPVPPPVAQAPPQPVVPLS
ERIEDTHKWSKTFENEEKEVPTSIKVYEQIIERDMDYDRRSVAETKKPFNAEQLQAMARD
LKFYQTIRDSRLKAIALTEAGKNAESIWGDGYSGYGNGFSAGKTRLVFPRNRKKHSRVPD
DYIPPEAYEKQANKPEELVPIRLEFDVDRDSFKLNDTFLWNLNEGTISVERFAQILMEDY
KFPQGQASNVEKIVSSIKEQINEYHPMVYGEFKGSDLRLPISVDITIGNNQLVDKFDWDL
ANPDNDPEEFARVMCEEMALPNEFMTAISHAIREQCQIYVKSLFSVGYKFDGSPITSDEF
KDLNRSQIDKDSVVRARHHLQEYTPSLQEITFDALEKITKERERESRRKKRGQTRVGRRG
GIVLPDLHDLPKTFRTPVPSTVLPSGVNLGPPVDSYIDFPLQVEIPQEQLQALEEFRAQE
RVQAVPVDRVGPVVASNGVAYQIDMQRAIVRIKLRK
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgttcgagggctcttcgggcggacagccgccccctcaacagcagatgacgccacagatg
atcatccagaacctcatgcggatggatccacagcagcggaacgcagttatcatgaaaaac
ccgcaattgcagatgtttctccagcactacgaacaacaaagaaaggctgcactcaaccag
tcgatgaacccccagatgcaggcaaaaatcatccagcagcagcaacagcgacagatccag
cagcagagacagcaaatatccggccaggttccgggccagatgccacaccagataccgacg
cctgtgcccgcaccgcaggtggcccagaaaaaccccggcatgcaggcccagaaacgtatg
gttcgtaaacggagctctgcaaaggacccgcttgacccttctggaacgcctgtaggctcg
cccgtgatatctcaaggaccgcatcctgtccagaacatgggatatcctccaggtgcgcaa
tctggaccagtgccccctccagtcgcgcaggctccgccgcaaccggttgtgcctctctca
gagaggatagaagacactcataaatggtcaaagacgtttgagaacgaggagaaagaggtg
cctacgtcaatcaaggtgtacgaacagataatcgaacgcgatatggactacgaccgtcgt
tcggtggccgaaaccaagaaacctttcaatgcagagcaattgcaggcaatggcaagagat
ctcaaattttaccagaccatcagagactcccggctcaaggctatagcgttgacggaggcc
ggcaaaaacgcagaaagtatttggggcgacgggtactcgggctatggaaacggtttcagc
gcaggcaagacccggctagtgttccccagaaaccgcaagaagcattcgcgcgtgccggac
gattacatacctcccgaggcgtacgagaaacaagccaataagccagaggagctggttccg
attcgtctggagtttgacgtagacagagattctttcaagctaaacgacacttttctgtgg
aacttgaacgagggaaccatctctgtggagcggtttgcacagattctaatggaagactac
aagtttccccagggacaggcatcgaacgtggaaaaaatagtgagcagcatcaaggaacaa
atcaatgagtaccatccaatggtctatggcgagttcaaaggttctgatctacggctgccg
atttctgtggatataaccatcggcaataaccagctggtggataagttcgactgggaccta
gcgaacccagataatgacccagaggagtttgcgagggtaatgtgcgaggaaatggctctt
ccgaacgagttcatgacagctatctctcacgcaatccgtgaacagtgccaaatctacgtc
aagtcgctattttccgttggatacaagttcgacgggtcgccgatcacgagtgacgagttc
aaggaccttaaccgttcgcagatcgacaaggactcggttgttagagcgcgccatcactta
caggagtacacgccgtcattgcaagagatcacgttcgacgcactggagaaaatcacaaag
gagagagaaagagaatcacgcagaaagaaacgtggccagacccgtgttggccgtcgcgga
ggaatcgtactgcccgatcttcacgatctgccaaagacgttccgcactccggtgccttca
acagttcttccgtccggcgtcaatcttgggcctcccgtggacagctacatcgacttcccg
ttgcaggtggaaattccacaggagcaactacaggctcttgaggaattccgggcacaagag
cgggtgcaggctgtgccggtcgaccgcgtgggtcccgtggtggccagcaacggcgtcgct
taccagatcgacatgcagcgtgcgattgtgaggatcaagctaagaaaataa
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