Ogataea parapolymorpha: HPODL_03949
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Entry
HPODL_03949 CDS
T08137
Name
(RefSeq) mRNA 3'-end-processing protein YTH1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
opa
Ogataea parapolymorpha
Pathway
opa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
HPODL_03949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opa03021
]
HPODL_03949
03019 Messenger RNA biogenesis [BR:
opa03019
]
HPODL_03949
Transcription machinery [BR:
opa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
HPODL_03949
Messenger RNA biogenesis [BR:
opa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
HPODL_03949
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_4
zf-CCCH_3
YgbA_NO
Motif
Other DBs
NCBI-GeneID:
25773380
NCBI-ProteinID:
XP_013934203
UniProt:
W1QCM4
LinkDB
All DBs
Position
V:complement(303658..304362)
Genome browser
AA seq
234 aa
AA seq
DB search
MASSQNPSMPLAPPIMPPLGMMPALGMFNVGSDKATFKFEPYLRRQYGFGLNPDRPICEF
WLQSGKCPNGNDCENKHPSKIFNNKIVCKYWLRGLCKMGDDCDFLHEYNLQRMPECAYYS
QNGVCTQSPECIYLHVDPQSKIAECYNYSNLGYCPDGPKCQRRHVRKVMCPLYLTGFCPK
GPECELSHPKFNPAMIQGRFKIRTDEQIIAGRKAKLEQQQREAEKTDNHDGLQI
NT seq
705 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtctcagaacccgtcaatgcccctggcgccgccaataatgccgccgctgggg
atgatgcctgcgttggggatgtttaacgtggggtctgacaaggcaactttcaagtttgag
ccctatttgcgcagacagtacggttttggcctcaacccagacagaccgatctgcgaattt
tggctgcagtcgggaaagtgtcccaacggcaacgactgcgaaaataagcacccttccaag
atatttaacaacaagatcgtgtgcaagtactggctgcggggactgtgcaagatgggcgac
gattgcgactttttgcacgaatataacctccaacgtatgcccgagtgcgcgtactactcg
cagaacggagtgtgcacacagtcgccggagtgcatttacctccacgttgacccgcaatcg
aagatcgctgaatgttacaactactcgaacctgggatactgtccagacgggcccaaatgc
cagagaagacatgttcgcaaagtcatgtgtccgctgtatcttaccggattttgtcccaag
ggccctgagtgcgagctgagccatccaaagttcaacccagccatgattcaaggccgcttc
aagatacgaacagacgaacagatcattgcgggacggaaggccaagctcgaacagcaacaa
cgcgaggcggaaaagacggacaatcacgacggattgcaaatatag
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