Ogataea parapolymorpha: HPODL_03976
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Entry
HPODL_03976 CDS
T08137
Name
(RefSeq) Transcription elongation factor
KO
K11292
transcription elongation factor SPT6
Organism
opa
Ogataea parapolymorpha
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opa03021
]
HPODL_03976
03036 Chromosome and associated proteins [BR:
opa03036
]
HPODL_03976
Transcription machinery [BR:
opa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
HPODL_03976
Chromosome and associated proteins [BR:
opa03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
HPODL_03976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HTH_44
YqgF
Spt6_S1
HHH_7
SPT6_acidic
Tex_central_region
SH2
HHH_9
Motif
Other DBs
NCBI-GeneID:
25773407
NCBI-ProteinID:
XP_013934230
UniProt:
W1QBG7
LinkDB
All DBs
Position
V:344832..349157
Genome browser
AA seq
1441 aa
AA seq
DB search
MSDRESSIVAENENELKTGEDFIENVAEQDAEDNANDEVSALDSSEEDEDEDEDEEALRK
VREGFIVDDEESSQEDESIDEDERRRRRKHKKRKREAIRKLEEDDELDEDDLELLRENAG
ELPRHLAEKTKFKRLKRGGDDQTSAGPTSKGLTDMFSDEEGAGEEDGEEGEEQEEEEDDL
MEASKKLRQQRQQDLLGEFDDFIEDDEFSEDEEERDERLARMRSARAKQANLASNSQFDQ
DKLDELYEIFGDGEEYAWALEAESLDEEPEMEDEVDEEGYAVKKLSKETHALNKVFEFEE
LKEHLLTDRDQEIRITDIPERYQAYRERITNYDLNDEEFQLKQNWVSKVLLEEKKAFFLG
KEDLVEPFQKAVAQIVYFVSKDNLEVPSIWNCRKDYTLHTYREDGQLRVQKLLTEDDLWR
IVQLDIDFYALLEKKKNIEKQFKSLDTVDTLYDEYIDSAKTVTELQDLQEYLSFTYSARQ
RELYPEETKGKQKSHSKYKIFERIKSDPVYEVIDKIGINAEKFGENVFTNNKIYLVDDID
KKADDLISECVEKGSFFDTVEKASNAIKHMFSEQLFHNPKLRAHLRLAFQSYASVDIKLT
EKGRLKITESSPYADFKYAINRPLESFTLQPDLFLRMLEAESLGLVKIDIGLKNAFANFA
DHLFTFLSSDGTSDLSNSWNSLRRECLDMALKKLIPSIVLDVKEKLRDTCERLLFYEIRE
SFMEKVDQAPFHPLPTAKGTVPKVLAITNGDGKRDSAIIAVAMDYDGTVFDHIKFEQNHR
HGDFEKQFLEIVRKFKPEVVAVSSYNVEVSHLFRKLQDIVRLNNLTVEIDVDEEYEGDPI
PLPVIYVPNETSRLYEHSDRAAEEFSDKPVVARFCIGVARYVQSPLLEYMALGDAVTSIS
VHKHQNLLPTHKVKEAIDTIFVDVACLVGIKINDAVRSPYLSTMLQYIAGLGPRKASSLI
RGIEANGGSLLRRDELIVRELSTKVVFMNCAPFIELPVPDRPDKDVELLDATRIHPEDYE
LARKMASDALDLSEEEKQEIEQEEGGVISKLYDEGVEKLDDLLLEGYADQLEEHGHRKRA
TLEMIKEELQNNYEELRKSFHILSEDEVFEMLTGESKELFQRGKLVSVILQRVDNRFMLG
VTQSGISCNISRSNALEYGDNTNLLTKYQNGQAVQAVVQTVDYANFKAELSLLKRDIEEA
SRGKKVDKFQGLWDFEAEREDLAKEQEKEKKENSTKRVIKHPYFHNFNAREAEDYLASKN
NGEFVIRPSSKGNDHLTVTWKIENQLFQHLDVLELDKLNDYTVGRTLQVGEFRYHDLDEL
IVSHINNLYLKVEEIVNHDKFKNEPLNDTKEWLIRYSKANKNRSCYCFCYNHKSPGWFYL
LFKLNDKSDKLYTWNIKVQPNGYLLHGNLYPDMVHLCNGFKKLLQNQMSSSRSGYTSYGR
F
NT seq
4326 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaccgtgagagcagcattgttgccgagaacgagaatgaactgaaaaccggcgaa
gactttattgaaaatgtagccgaacaggatgctgaagacaacgcaaacgacgaggtctca
gctctagactcctccgaggaggacgaggacgaagatgaggacgaagaagctctacgcaaa
gtgcgggaaggatttatcgtggacgatgaggagagcagtcaagaagatgaaagcatagat
gaggacgagcgcaggagacgtcgtaagcacaaaaagagaaagagagaagcaatcagaaag
cttgaggaggatgacgaacttgatgaggatgacttggagctgctcagagaaaatgctggt
gagctaccgcgtcatttagcagaaaaaaccaaattcaagcgtcttaaaaggggaggtgac
gatcaaacgtcggcaggaccgacctccaaaggcctgacagatatgttttcggacgaagag
ggcgctggggaagaggacggcgaggaaggagaagaacaagaggaggaggaagatgatctg
atggaagcctctaaaaagttaagacagcaacgacagcaagatcttctcggggaatttgat
gatttcattgaggacgacgagttctcagaagatgaggaagagagagatgagcgtcttgcc
aggatgagatcggcaagagccaagcaagcaaatcttgcttccaactcgcaattcgaccaa
gacaagcttgatgaactttacgaaatatttggtgacggagaggagtatgcatgggctttg
gaagccgaaagtctcgacgaagagccagagatggaagacgaggtcgatgaggaaggttac
gcggtcaaaaaactttccaaggagactcacgcgctgaacaaggtctttgaatttgaagag
ctgaaagagcaccttttgactgacagagatcaagaaatcagaataacagatattccagag
cgataccaggcttacagagagcggataactaactatgatttgaacgatgaagaatttcaa
ctcaagcaaaattgggtctccaaagttttgctggaggagaagaaggccttctttcttgga
aaagaagatctcgttgaaccattccaaaaggctgttgcccaaatcgtgtatttcgtctca
aaggacaacctagaagttccaagtatatggaattgcagaaaggactacacacttcacact
tatcgtgaagacggacagttacgagttcaaaaactgctgaccgaggacgatctttggaga
atcgtgcagctggacatagacttctatgcccttttggagaaaaagaagaacattgaaaag
caattcaagtcattggacacagtcgatactctttacgatgagtatattgattctgctaag
acagtgactgagttgcaggatcttcaagaatatctttctttcacatacagcgcaaggcaa
cgcgaactttaccctgaagagacgaaggggaagcagaagtcgcactctaaatacaagatc
tttgagagaatcaaaagcgacccagtttacgaagtgattgataaaataggtatcaatgcg
gagaaatttggagagaacgtctttacgaacaacaagatttacttggttgacgacatcgac
aaaaaagctgatgacttgatcagcgagtgtgttgaaaagggctcattttttgacaccgtg
gagaaagcaagcaacgctattaaacacatgttttctgagcagcttttccacaatccaaaa
ctcagagcgcatttgagacttgcattccagagttatgctagcgtggatataaagcttacc
gaaaaaggaagactcaaaatcactgagagctctccttatgctgacttcaagtatgctatc
aacagacccctagaatcgttcaccttgcaaccagatttgtttttgcgcatgttggaagcc
gaatcattggggcttgtgaaaatcgacatcggcctgaaaaacgccttcgcaaacttcgct
gaccacctatttacgtttttgtcgtcggatggtacctctgatctgagcaattcttggaac
agcctaagaagagaatgtcttgacatggctttgaaaaaactcattccatcgattgttctt
gatgtcaaagaaaagctaagagacacatgtgaaagattactgttttacgaaatcagagag
agcttcatggagaaggtggaccaggctccgttccacccactcccaaccgccaagggcact
gttccaaaggttttggcaatcactaatggtgatggaaagcgtgattctgcaataattgct
gttgcgatggactacgacggaactgtttttgaccacatcaagtttgagcaaaatcacaga
cacggagattttgagaagcaatttttggagattgtcaggaagtttaagccagaggtggtc
gctgtgtccagctacaacgttgaagtttctcaccttttcagaaagcttcaggacattgtc
agactgaacaatctcactgttgaaattgatgttgatgaggaatacgagggcgacccaatc
ccacttcctgttatctacgttccaaatgaaaccagcagactttatgagcattccgaccgg
gcagctgaagagttcagtgacaagccagtggtggcccgtttctgtattggtgtggcaaga
tacgttcagagtccattgttagaatatatggcattgggggatgcagtgacttctatttct
gtgcacaaacatcaaaatttgcttccaactcataaggtcaaggaagcaatagatacgatc
tttgttgacgttgcctgtctggtcggcatcaagatcaatgacgccgtgaggtccccttac
ctatctaccatgctgcaatatattgctggtctcggccctagaaaagccagcagcttgatc
agaggcatcgaagccaatggaggctctttgctgaggagagacgagctgatcgtgagagag
ctatccaccaaggtggtgttcatgaactgtgctccgttcatcgagctgccagttcctgac
aggccagacaaagacgttgagctcctggatgccaccagaatccatcctgaggattatgag
cttgccagaaaaatggcgagcgacgctttggacctcagcgaagaagagaagcaggagatt
gaacaggaagaaggtggtgtcatttccaagctttacgacgaaggagtcgagaaactggat
gaccttcttcttgaaggttatgctgaccagttagaagagcacggacatcgtaagagagcg
accttggaaatgatcaaggaagagttgcagaacaactatgaggaactcaggaaatcgttc
cacatcctcagcgaggatgaggtttttgaaatgcttacgggcgaatcgaaagagcttttc
cagcgtggaaaactagtttcagttattttgcaaagggttgacaacagattcatgttggga
gttactcagtctggaatttcgtgtaacattagcagatccaatgcgctagaatacggagac
aacacaaacctactcacgaagtaccagaatggacaagcagttcaagctgttgttcaaaca
gtcgactacgcgaatttcaaagcagaattgtctttgctgaaacgtgatattgaggaggca
agtcgcggaaagaaggtggataagttccaaggtctgtgggacttcgaggctgaacgtgag
gatcttgctaaggagcaggaaaaagagaagaaggagaacagcacaaaacgtgtcatcaag
catccatacttccacaatttcaatgcccgtgaagcagaggattaccttgcttccaagaac
aacggagagtttgtgatcagaccgtcttctaaaggaaatgatcacctgactgtcacctgg
aagattgaaaaccagcttttccaacatcttgatgtgttagagctagacaagctcaatgat
tacacagttggccgcacccttcaagttggagagttccgttatcacgatctggatgaactg
attgtctcccacatcaacaacctgtacttgaaggtggaggaaattgtcaaccacgataag
ttcaaaaacgaacctctcaacgatacgaaggagtggctcatcagatattccaaagccaac
aagaaccggtcatgctactgtttctgctacaaccacaagtctccgggatggttctacctg
cttttcaagctgaacgacaagagcgataagctgtatacttggaacataaaggttcagcca
aacggttatctgctacatggaaacctttaccctgacatggtccacttgtgcaatggtttc
aagaaattgctacaaaaccaaatgagcagctcaagaagcggttacaccagctatggtaga
ttctga
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