Ogataea parapolymorpha: HPODL_04008
Help
Entry
HPODL_04008 CDS
T08137
Name
(RefSeq) ATP-dependent rRNA helicase SPB4
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
opa
Ogataea parapolymorpha
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
opa03009
]
HPODL_04008
Enzymes [BR:
opa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPODL_04008
Ribosome biogenesis [BR:
opa03009
]
Eukaryotic type
Pre-60S particles
Helicases
HPODL_04008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
CTT_SPB4
ResIII
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
25773439
NCBI-ProteinID:
XP_013934263
UniProt:
W1QCR6
LinkDB
All DBs
Position
V:415516..417336
Genome browser
AA seq
606 aa
AA seq
DB search
MAAESKLTWDSLPYKLLPWLREALVSNGYESMTPVQASVIPLFSGNKDVVVQAVTGSGKT
LAFVIPVLEKICHFLREESTFKKGHFGSLIICPTKELAFQIEAVINNLVEFCPDENYKLK
AQVVLGGMGTVLTDVQNFMKTRAQVIIATPGRALEFLQHSMVKSSSCQVLILDEADRLLD
HNFSSEMSLIAKILPRQKRVGMFSATMSAVIDDVFKLGMSNPVRITVKSDHLSQKLIPSK
LKLFYSIVPADEKIGFLFHLLESYQFKRAIVYFPTCVCVSYFYLLLNHLLSCLNKQGNGC
KGIKLHSLHGKLQLETRTKTLSHFSGLSDCKNVLLSTDVAARGLDIPDVDLVIQLDPPTD
PDVFVHRCGRAGRAGKPGTAVVFLTPGLEENYVDFMSMRKVELHDLGNVHYNPQRFELIH
TESRTWLLADRARHEKATKAFVTYIRHYSKHSAASIFRLSALDYWRLAKEFSLFRFPKMP
ENRFIHDFPEGGFIDKSVNFESHSYLNTQKENERLQQLCSSSKAVQLNDAMLDRKARKEK
NLPWSKNSKSKVNEKQSSFSLKESKKKKRLLLPEAGIRETQEDWKDLVRSNKRRKASETT
SFFNDL
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagaaagtaagctaacatgggactccttgccttacaaactacttccttggctt
cgggaagctttggtctcgaacggttatgaaagtatgactcctgttcaggcctcagtaatt
ccgttgttctctggaaacaaagatgttgtggtgcaagctgtgacaggttccggcaaaaca
ttggcatttgtcattccagttttggagaaaatatgtcatttcctacgtgaagaatcaaca
ttcaaaaaagggcattttggatctttaattatatgtcctacgaaagagctagcatttcag
atagaagcagtcatcaacaatcttgttgaattttgtcctgacgagaactataaactaaaa
gctcaagtcgttcttgggggtatgggaactgtattgacagatgtacaaaatttcatgaaa
acccgagcacaagtcattatcgccactccagggagagcattggaatttttacaacactcc
atggtgaaatcatccagttgtcaagtattaattttggatgaagctgatcgattacttgat
cacaatttcagttcagaaatgtcattaattgccaaaattttgcctcgacagaaaagggtt
ggaatgttctctgcaactatgtctgcagtgatcgatgatgtatttaagcttggcatgtcc
aatcctgtccgtatcactgtgaaatctgatcatttgagccaaaagctgataccctcgaag
ttgaaactattttatagcatcgtcccggccgatgagaaaatagggtttcttttccatctg
ctggaatcttatcaattcaaaagggcaattgtttatttccccacatgtgtgtgtgtttct
tacttctatctgttgctaaaccatctcttgtcctgtttgaataaacaaggcaacggttgc
aaaggtataaagctacattccttgcacggaaagctgcagttggaaactaggacaaaaacg
ctgtctcatttttccgggctttcagattgtaagaacgtgctgctcagtacagatgtcgcc
gctcgaggcttagatatacctgatgtcgatctggtcatacaactcgatcctcctacggac
cctgacgtgtttgttcacagatgtggtcgcgctggtcgcgctggaaaacccggtacagct
gtggtgtttttgactccaggcctagaagaaaactacgttgatttcatgagtatgagaaag
gtagaattacacgaccttggcaatgttcattacaatcctcaaagatttgagctcatccat
acggagtcacgtacctggttacttgctgatagagctagacatgaaaaggcgacaaaggcg
tttgtgacttacatccgacattactcgaaacattctgctgcgtctatattccgactttct
gccttggactattggaggctcgctaaagagttctccctttttaggtttccaaagatgcca
gaaaacaggttcatccatgattttcctgagggcggattcattgataaaagtgtgaatttc
gaaagtcactcgtacttaaacactcagaaggaaaacgaaagattgcagcaactttgttca
tcctcgaaagcagtacagctcaatgacgcaatgctcgatagaaaagcacggaaggaaaag
aatttaccctggagtaaaaattcaaagtctaaagttaacgaaaagcagtcgtcgttcagc
ttgaaagagtctaagaaaaaaaaacggctattattaccagaagctggaattcgggaaaca
caggaggattggaaagatctcgtgaggtccaataagagacgaaaggcgagcgaaacgacg
agtttttttaatgatttatga
DBGET
integrated database retrieval system
