Ogataea parapolymorpha: HPODL_04112
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Entry
HPODL_04112 CDS
T08137
Name
(RefSeq) Nucleoporin, essential subunit of the nuclear pore complex (NPC)
KO
K14308
nuclear pore complex protein Nup54
Organism
opa
Ogataea parapolymorpha
Pathway
opa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
HPODL_04112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opa03019
]
HPODL_04112
Messenger RNA biogenesis [BR:
opa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
HPODL_04112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nucleoporin_FG
TFIIA
Motif
Other DBs
NCBI-GeneID:
25773543
NCBI-ProteinID:
XP_013934370
UniProt:
W1QBU0
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Position
V:629668..631101
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AA seq
477 aa
AA seq
DB search
MSGFSFGGQSSAPSGGFSFGNNNASTNTNTGNTGGGFSFGNNASTGFGNTGGFSLGGNTT
QNASTQNASSGTTGSTGNTGFMFGNTANTNTGTAAPSTQGNLFGNTNSSGTGQSLFGNNS
KAQSTTGSNLFSANNQSGTTGGGFSFGANTGSNTATTGGTSLFGGNSQPAQQTQNTQPAQ
SQPAFNSQPSFAWSTQQSQQQSLHPMVVEAQKVNQQQNQQQNGYTPTIADQLTKVKNSWD
ANSNQCLMKTFVYNKVPQEYNNYERPADESAEDWENAMKLRPRGYNTLPVRIKGFEDLLN
RSNLQIEHIRKSRILLNNINSNLVNLGDKHDLDSLNRLTRCKIKQKQLDLKLLRIAINLT
VLKYKGYQLTNDEEKLISQFKELVKLVDDPIGLNRSNELWARLSNLKQRLINLNISLDNI
DASMAVATNSTVSKSHVSNDEQVISKLVSILSKQQQGIQFLYDLIENDKEVVNKLAK
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgtctggattcagttttggaggacagtcttcggcgccgagcggcgggttctcatttgga
aataacaacgccagcacgaacaccaacacgggtaacaccggcggcgggttttcgttcgga
aacaatgcgtcgactgggtttggcaacacgggtggtttttcattaggtggaaacaccacg
caaaacgcttccacgcagaacgcttcctcggggaccacaggctccacgggaaacacaggt
tttatgtttgggaacactgccaacaccaacaccggcaccgcagcgccaagcacacaaggc
aatctttttggtaacaccaacagctctggcacaggccagagcttatttggcaacaacagc
aaagcacagtccacaacaggatcgaatctctttagcgcaaataaccaaagcggaacgact
ggtggcggattttcgtttggagccaacaccgggtccaatacggccaccactggaggtact
tccttgtttggtggtaattctcagcctgctcaacagactcagaacacgcagcccgcacag
agccagcccgcttttaattcccagccgtcctttgcatggtcgactcagcaatcgcagcag
caaagtttgcatccgatggttgttgaggcacagaaagtcaaccagcagcaaaatcaacag
cagaacgggtacacgccgacaattgcagaccagctcaccaaagtgaagaactcatgggat
gcaaactcaaatcaatgtctgatgaagacgtttgtgtacaacaaggtgccgcaggagtat
aacaactacgagcggcctgccgacgagtctgctgaggactgggagaacgcgatgaaattg
cgtccgcgcggctacaacacgctgccagttagaatcaagggatttgaggacttactgaac
agatccaatttacaaatagaacatattcgcaagtcgaggattcttctcaataacatcaac
tcgaacctggtgaatcttggcgacaaacatgatttggactcattgaacagactgacacgg
tgcaagatcaagcagaaacagctggatctcaaactgctgagaattgccatcaatctgacg
gtgctaaaatataaaggctaccagctaaccaatgacgaagaaaaattaatatcgcagttt
aaagagctggtcaagttagtggacgacccaataggtctgaacagatcaaatgagctgtgg
gccagactcagcaacttgaagcagagactcatcaacctgaacatcagcttggacaacatt
gatgcgtcgatggcggttgctaccaacagtactgtgtcgaagtcgcatgtttcgaacgac
gagcaggtgatcagcaagcttgtcagcattctttccaagcagcaacagggcatacaattc
ctgtatgacttaattgagaacgataaggaggtggtcaacaagctggctaaatag
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