Ogataea parapolymorpha: HPODL_04257
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Entry
HPODL_04257 CDS
T08137
Name
(RefSeq) bloom syndrome protein
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
opa
Ogataea parapolymorpha
Pathway
opa03440
Homologous recombination
opa03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HPODL_04257
03460 Fanconi anemia pathway
HPODL_04257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
opa03032
]
HPODL_04257
03400 DNA repair and recombination proteins [BR:
opa03400
]
HPODL_04257
Enzymes [BR:
opa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPODL_04257
DNA replication proteins [BR:
opa03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
HPODL_04257
DNA repair and recombination proteins [BR:
opa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
HPODL_04257
Bloom's syndrome complex (BTR)
HPODL_04257
FA (Fanconi anemia) pathway
HPODL_04257
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
RecQ_Zn_bind
Helicase_Sgs1
HRDC
Motif
Other DBs
NCBI-GeneID:
25773685
NCBI-ProteinID:
XP_013934524
UniProt:
W1QC66
LinkDB
All DBs
Position
V:872002..875835
Genome browser
AA seq
1277 aa
AA seq
DB search
MLLNITDHLKWLSQTRPQIPPIPQFPPSTPDQLQEHITKPAPPDVARESVALPPRINNQT
QSRVLVRASTVTPETINEMSGIMARKADSVRQRSLGSSQNSVGVIDLTNERVAAARKRAN
EAAGSSFSKKPRINDDDEFSDDDDIEAILANRHSSNSTTKSVPREEQLSFTDLSKIVENV
NLMSTDARELIKLQFSLMAQMDSLSSLLRQNISVDESTSISEDDKRRRRGQLAHDIQRSQ
AVCNETRLQIQHFCINKIGRRLDGDISSEIDTTAMPFTSTAYTAKTTTQLIPTREEINQT
PSTINATNQSTFPSPSFKVPPVPSTAVSEREERHNSQLDIEDSFNCDSDEPEVISTQEKA
ELDQFIVNDEISGDDESYKEDDIEDIDNTELGDIQGSLEIEDVEEGIEHMEIVQDNAILL
DSPQDEFSEEETGNDYFTQLNEERELDVIDLEDEQFWDSDAENEIFDRRNEQSKRSEPQQ
QISQHSDSDIEELTNVNPDAYKKFMGKFEWTTEVYSVLRNTFKLPSFRENQLEAINATLS
GEDVFVLMPTGGGKSLCYQLPALVKSGITSGTTIVISPLISLMQDQVHHLLQNQIKAAMI
NSKSSASQRKQTFDLFVNGFLDLVYLSPEMISASGMVRNAIATLHKKKMLARVVVDEAHC
VSSWGHDFRPDYKALSYFKTEYPEIPMMALTATANEHVRMDIIHNLNLKHPKFFKQSFNR
SNLYYEVLPKKKTVVEEIAQLINRKYKNMTGIIYCHSKNSCEQTATRLADYGIKCDFYHA
GMTQDDRQRVQLGWQTNEIQVICATIAFGMGIDKPDVRFVIHLTLPRNLEGYYQETGRAG
RDGKHSDCIMYYSMRDARTLQGMIMRDKELDRFNKEQHVNKLRQVTQYCENTTDCRRQQV
LQYFNETFNRKDCHKQCDNCINGENFEVENRDMTVFAKNVINLVKTLNGENLTVIQCQDV
FRGSKTAKIVNLGLHLNEYHGNGRDLPKMEIERLFFHLLREGFLEEKSVMNAAGFATNYL
VLGPKANDVLSRGKKVVIPFTRSKTTRLETPSLSRTANKENTAPQFLSASKFFSVGPPNA
SKKPVKQLDPKLADHINKSYLKLREHRSLCSTHLNHSRDSTMASDTTLKDMAMKLPTTKM
EYDRLDGMEKNQTQYFQKFERVLGALRQERDALLGSKSPELEVVSSSLPSQQDHKVVNQL
SQLFYPESQNTTRKSNNTLRSKTSSQRGGRSYRRGGSRGGSRGGLRRSGKPGSRGNYRRA
KVQPKQPSGSVIRTMRM
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atgctcctcaacatcacagaccatttgaaatggctgtcccaaacgaggcctcagattcct
cctattccccagtttccgccgtcgactccagatcagctgcaagaacacatcacaaagcct
gctcctccggatgtcgcccgtgaatcagtggccctccctccacggatcaacaatcagacc
cagtcgagagttctggtgcgtgcaagtacagtcactccggaaacaattaatgaaatgagc
ggaatcatggcacgcaaagccgactctgtgcggcaaaggagtctaggatcgtcgcagaac
agtgtgggtgtgatcgatctgacgaacgaacgggtcgctgcagcgcgcaaaagagcaaat
gaggctgccggcagctcgttcagcaagaaaccgcgtattaatgatgatgatgaattttct
gacgacgacgacatagaagctatattggccaatcgccattccagcaactccaccaccaaa
agcgtaccgcgagaggagcaattgtcctttactgacctatctaagatagttgaaaatgtc
aacctcatgagcacagacgcaagagaactcatcaagctacagttctcactgatggcgcaa
atggattcattatcgtctcttctgcgtcagaatatatcagttgacgagtcgacctctatc
agcgaagacgacaagaggcgcagaagaggccagttggcgcatgacatccagcgatcacag
gcagtctgtaatgaaacacggctccaaatacaacatttttgcattaataaaataggcaga
aggcttgacggtgatatcagctcagagatagataccacagccatgccttttaccagcaca
gcatacacagcgaaaactaccacacagcttattcccacacgagaggaaatcaatcagaca
ccttcaaccataaatgcaactaaccagtccacctttccaagtccatcgttcaaagtcccc
cctgtaccatccactgccgtttctgagcgtgaggagcggcataactcgcaactggatatt
gaggattcattcaattgcgacagtgacgagcctgaggtgatctcaacacaggaaaaggca
gagcttgaccagttcattgtgaacgacgaaatttccggcgacgacgagtcttacaaagag
gatgacatagaggatatcgataacacagagctcggcgatattcagggctcgttggagata
gaagacgtcgaggagggtattgaacacatggaaattgttcaggataatgctattcttctg
gactcgccgcaggatgagttttcggaagaagagacagggaacgattatttcacacagctg
aacgaggagcgagagcttgacgttatagacctagaggacgaacaattttgggacagcgac
gcggagaacgagattttcgataggcgcaatgagcagtcgaagaggtccgagccacagcag
caaatctcgcaacattccgactctgatatcgaagagctaacaaatgtgaatccggatgcg
tacaaaaagtttatgggcaagttcgaatggactacagaagtgtactcggtgttgagaaat
actttcaagctgccatctttccgagaaaatcagcttgaagctataaatgccacattgagc
ggagaggatgtatttgttctgatgccaacaggcggtggaaaatccctctgctaccaattg
cccgcgctcgtcaagtctggaatcacaagcggtacaaccatcgttatctcgcctttgatt
tccttgatgcaagaccaggtgcatcatctactacaaaaccaaatcaaagcggcaatgatc
aactcaaaatcgtctgcctcgcagaggaaacagacatttgacctttttgtcaacgggttt
ctcgatctggtgtatttatctcccgaaatgatcagtgccagcggaatggtgagaaatgcc
atcgccacacttcacaagaaaaagatgctagcaagagttgttgtggacgaggctcactgt
gtctcctcttggggccatgatttccgtcccgactacaaagctctgagctatttcaaaacc
gaatatccggaaattcccatgatggccctcacggcaacagcaaacgagcatgttcggatg
gacatcatccacaatctcaatctgaagcatccgaaattcttcaagcagagtttcaacagg
tccaacttgtactacgaagtgttaccgaaaaagaagaccgtggtggaagagatcgcacag
ctgatcaaccgcaaatacaaaaatatgacgggcataatctactgccactcgaaaaactcg
tgtgagcaaacagctacacgactcgccgactatggtatcaaatgcgacttctaccacgca
ggaatgacccaggacgaccgtcaaagagtgcagctgggctggcagaccaacgaaatccag
gtcatctgtgccaccattgcgtttggtatgggaatcgataaacccgatgttcgattcgtc
atccaccttactcttcctcgtaatcttgagggatattatcaggaaactggaagggctggg
agagacggaaaacattctgactgcattatgtactacagtatgagggatgcgcgtacttta
caaggaatgatcatgcgtgacaaggagctcgaccggttcaacaaggaacaacacgtgaac
aaattacgccaggtgacacagtattgcgagaacactacagattgtcgccgtcaacaggtg
ctgcaatatttcaacgaaactttcaaccgcaaagattgtcataagcaatgtgacaactgc
attaatggcgagaactttgaagtcgaaaaccgcgacatgacagtgtttgccaaaaatgtg
ataaatctcgtcaagactctcaacggagaaaacttgactgtgatccaatgtcaggacgtt
ttcagaggatccaaaacagctaaaattgtcaacttgggtctacatctaaacgagtaccat
ggaaatggccgggatctgcccaagatggaaatcgagcggttgtttttccatctcttgaga
gaaggcttcctagaagagaaatctgtgatgaatgctgctggcttcgccacaaactatctc
gtccttgggcccaaagctaacgatgtgctctctcgcggcaaaaaagtggtgataccattc
accagaagcaagactacccgattggagacgccatcattgtctaggacagccaataaagag
aatacggctccccagttcctttctgcaagtaagtttttctctgtcgggcctccaaatgcc
agcaaaaagcctgtgaagcagttggatcccaagttggccgaccacattaacaaaagctat
ctgaaattgcgagagcaccggtcgctatgctctacgcacctaaatcattcaagagactcg
actatggcgtcagataccacattgaaagatatggccatgaaattgccaactacgaaaatg
gagtacgataggcttgatggtatggagaaaaaccaaacacagtacttccagaagtttgag
cgtgttttaggggccctaaggcaagaacgcgatgctttgctgggttcaaagagccctgag
ctcgaagttgtatcgtcatcactcccgtctcagcaggatcacaaagtagttaatcaactt
tcgcagctgttctatccagaaagccaaaacactacacgcaaatcgaataatactttacga
agcaagacttcaagtcagagaggaggccgttcgtaccgcagaggtggatcgagaggtgga
tcaagaggaggactgcgccgatctggtaaaccaggctctcgaggtaattacagaagagca
aaagtgcaacctaagcagccttcagggtctgtcattcgcacaatgaggatgtaa
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