Ogataea parapolymorpha: HPODL_04305
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Entry
HPODL_04305 CDS
T08137
Name
(RefSeq) Protein involved in exosome mediated 3' to 5' mRNA degradation
KO
K12601
superkiller protein 8
Organism
opa
Ogataea parapolymorpha
Pathway
opa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPODL_04305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opa03019
]
HPODL_04305
Messenger RNA biogenesis [BR:
opa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
HPODL_04305
BRITE hierarchy
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GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
NBCH_WD40
Glyoxal_oxid_N
Motif
Other DBs
NCBI-GeneID:
25773733
NCBI-ProteinID:
XP_013934575
UniProt:
W1QCE1
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All DBs
Position
V:complement(957872..958969)
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AA seq
365 aa
AA seq
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MGKQYISTAIVGDAHQSDILDVCVSKKYTVTCSADGSLKLWSNSSSDRPLETKVFVDKFG
LHHVSLFETSDFLLIGTVSFSGKFYLYKMSDQLVAVDDLPAELKNEKSSFWALKFMKDLE
EDNNVLAITMASGETQIYNLQGETLTYTATTSSTDKSFATSVDLDPTFKRMAVGHQNGNV
YIYDLEYLKPLYEFQSYGLKKATSSSSLSTVRCVRFSPGGTLLAVARDSGAYGTIFLYDV
KYGEVIGTLTNASHSSNVGIGGFAHNSWCMSVSFNEDGTLLASGGLDDTIRVWSTSTRTK
EASLVVSKSDVDDEALSHTNQLDNATCCALSFIPRGLVAGEGDNDGLVIVGFDRVVRWFR
EAGGV
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaacaatatatatccactgcgatcgtgggagacgcgcaccagtccgacattctg
gacgtctgcgtctccaaaaaatataccgtcacctgctcggccgacggatcgcttaaactt
tggtccaattcctcttccgaccggccattggaaacaaaggtgtttgtcgacaagtttggg
ctacaccacgtttccctgtttgaaacgagcgatttcttactgattggcacggtgtctttt
tcgggaaagttctacctgtacaaaatgagcgatcagctcgtcgccgttgacgaccttcct
gcggagcttaagaacgagaaaagctcattttgggcactaaaattcatgaaggacctcgaa
gaggacaacaacgtgttggcgatcacgatggcttccggagaaacacagatatacaacttg
cagggtgaaacattgacgtacactgccacaacgtcctcaacagacaaatcgtttgcaacg
agtgttgatctggaccctacatttaagagaatggccgttggccaccagaacggcaacgtg
tacatctacgacctggagtacctcaagccattatatgagtttcaatcctacggcctgaag
aaggcgacgtcctcgagctcactgtcgacagtgcgatgtgtgcgattctcgcccggaggc
acgctgttggcggtggcgcgcgactcgggcgcatacgggactatcttcttgtacgacgta
aaatatggcgaggtcattggcacgctgaccaatgcgtcgcactcgtcaaatgtcgggatc
ggcggttttgcgcacaacagctggtgcatgtcggtttcgttcaacgaggacgggacgctg
ctggccagtggaggtttggacgacacgattcgggtctggagcacaagtacgcggaccaag
gaggccagtctggtggtgagcaagtcggacgttgacgacgaggccctgagccacacgaac
cagttggacaatgcgacgtgctgtgctctttcgttcattcctagaggtctggtggcgggt
gagggcgacaacgacgggctggtgatagttgggttcgacagggtggtcagatggttcagg
gaggctggaggagtgtag
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