Ogataea parapolymorpha: HPODL_04400
Help
Entry
HPODL_04400 CDS
T08137
Name
(RefSeq) Protein SKG3
KO
K12609
CCR4-NOT transcriptional complex subunit CAF120
Organism
opa
Ogataea parapolymorpha
Pathway
opa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPODL_04400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opa03019
]
HPODL_04400
Messenger RNA biogenesis [BR:
opa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
HPODL_04400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_26
PH
PH_9
Motif
Other DBs
NCBI-GeneID:
25773828
NCBI-ProteinID:
XP_013934673
UniProt:
W1QDY9
LinkDB
All DBs
Position
V:complement(1113556..1116219)
Genome browser
AA seq
887 aa
AA seq
DB search
MNKLRTFSRKEAMSPPKEKSSLPKRVETAESRGELSPALSPIATLLSAQAHRRYHEGVFM
ILKDLDSEGQPAERKWEEVYGVLTGNQLAVYRVEEMEQVPSVDSASKPSYINFTDATFKA
IDQLPSSGGNLNNVIIVSTTLKNRYLIQISSTEQFRRWHAAFRLAAAEYRLLQEAYTGAL
LSARGSLLSDIKVILAETKFDHEEWTSVRFGAGMPWKRCFTVIEPPAKKSKKRFVPGRVV
FYESEKKGKKLAMATITDANSIYAVYPQNYAVIDHSTMIKLDGSIVFSKSEGTKDCSIFL
MPDQHSSVPGYDTLIRFLIPLLDAFHLYGRPKGLNADKLDPKSLLFALPVLPKVHYLEVD
DLMQLTASATTSSWTSYQWQQGVKDILRPKVAKGYDGCGSVEGTAGAVGMLEFSRDLAAG
KVRSFSNPQSPTMTPKPQFGFDKEKHLSGLARETPKAEEKTPSQNVVDVKDNEDSGSLYS
ELRFRQREEQILTPELQPAREPQKKQSSPGGLAKIYSKYAQLPDYDQLNDSLANLDVNED
AIEDLYPKEESDGDEDEDDDYDIQIINPRTRTPAIVKSSPSPGPDTTPTMRPHAPYGQPN
PRFGSTSSLASSTDSGERSEKRVLSQERVVSPFTAFNKSYQEAIQPSFAYQPPPEPQDSK
VLEMPRQRAFRQDTDSGNSHAPAVELQNPPQRPSQPYYDPQRSGSSGSIEYRPAQQKPHF
QRAPPNNIVSQQVAYGGYQNPQLQPVPGQKLQSPYNPQGPSMYDYHSAPRPAPPQAAGYA
NGHANGYAAPQAPAANMSSPRRRPPPPLNHSQQYYPQSPNMNPQGFYPQQYARPYPEPSN
QPSKQPPSQPQQSFVPQQPRRDKNNPYALAKSAHETTVSYHKNPYSS
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagcttcggaccttttctcgcaaagaggcgatgtcgccgcccaaggaaaagtcc
tcgctccccaagcgcgtggagacggcggagtccaggggcgagctgagcccggccctgtcg
cccatcgccactctgctctctgcgcaggcccatcgcagatatcacgagggagtatttatg
attttgaaggatttggattcggagggccagcctgccgagcgcaaatgggaggaggtgtac
ggtgtgctcacaggcaaccagctggcagtttacagagtggaggagatggagcaagtgccg
tcggtcgactcggctagcaagccatcgtacataaatttcactgacgccacatttaaggcg
atcgaccagctgccctcgtcggggggcaacctgaacaacgtcatcatcgtgtcgactacg
ctgaaaaataggtacctgatccagatctcgtccaccgagcagttccgacgctggcacgcg
gcctttcgactcgcggcggccgaataccgcctgttgcaagaggcgtacacgggagcgctg
ctgagcgcgcgcgggtcgcttctgtcggacatcaaggtcattctggcagagacaaagttc
gaccacgaggagtggacgagcgtcagattcggcgccgggatgccctggaagcggtgcttc
acggtgatcgagcctccagcgaaaaaaagtaaaaagaggtttgtgcctggccgcgtcgtc
ttctacgagtcggagaagaagggcaaaaagctggccatggccaccatcaccgatgccaat
tccatctatgccgtgtatccgcagaattacgccgtcatcgaccacagcacaatgatcaag
ctggacggctctattgtattttccaagtctgaaggcactaaggactgctccatctttctg
atgcccgaccagcactcgtcggtgccgggctacgacacgctgatccggttcctgatcccg
ctactggacgctttccatctgtatggacgaccaaaaggcctaaatgccgataagctcgac
ccgaagtcgctgctgtttgcgctgccggtgctgcccaaggtgcactaccttgaggtggac
gatctgatgcagctcacagccagcgccacgacgagctcctggacgtcgtaccaatggcag
cagggtgtgaaggacatcttgaggccgaaggtggccaagggctacgacggctgcggctcg
gtcgagggtacagctggagctgtggggatgctggagttctcgagagaccttgctgctggc
aaagtgcggtctttctcgaacccgcagtctcctacgatgacgccaaaaccgcagtttgga
tttgacaaagaaaaacatctgtcgggtctggctagagagactccaaaggcggaggaaaag
acaccatctcagaacgttgtggacgtgaaagacaacgaggacagtggctcattgtattct
gagctgcgatttagacagcgtgaagagcaaatactgacccctgagctccagccagccaga
gaaccacagaaaaaacagtcgtcaccgggtggcctggcaaagatttactccaagtacgcc
cagctgcctgactacgaccagctgaacgactcgctggccaacttggacgtgaacgaagac
gcaattgaggacctgtatcctaaggaggaatcggacggggacgaagacgaggacgatgac
tacgacatccaaatcatcaatccaaggaccagaaccccagctatagtcaagtcgtctccg
tcgccaggccctgataccaccccaaccatgaggccgcacgcgccatatggccagccgaac
ccgcggtttggcagcacatcttcgctagcgtcgtcgacggactctggcgagcgctccgag
aaaagagttctttctcaggaacgagtcgtctcgccgttcacagcgttcaacaagtcgtac
caagaagccatccagcccagctttgcgtaccagccgcctcctgagccgcaggactcgaag
gttcttgaaatgccgagacagagagcatttagacaggacacagatagcgggaactctcat
gctccggcagtagagctgcagaacccgccacaaagaccgtcccagccatactacgaccca
caaagatccggctcgtccggctctatagagtacagaccggcgcagcagaaaccccatttc
cagcgagctcctccaaacaacatagtttcgcagcaggtggcgtacggcgggtatcagaac
ccccagctgcagcctgtaccgggccagaagctgcagtctccgtacaaccctcagggccct
tccatgtacgactaccactctgctccgcgacctgccccgcctcaggctgccggctatgcg
aacggacacgcgaacggctacgccgctccgcaggcgccagcggccaatatgtcgtctccg
cgccgcagaccgccgccgccgctgaaccactcccaacagtactatccgcagtcgccgaac
atgaatccgcagggcttctatccgcagcagtacgccagaccgtacccggagccgtctaac
cagccgtctaagcagccgcctagccagccacagcagagctttgttccgcagcagccgcgc
agggacaagaacaacccatacgcgctggccaagagcgcccacgagaccaccgtttcgtac
cacaaaaacccgtactccagctaa
DBGET
integrated database retrieval system
