Ogataea parapolymorpha: HPODL_04406
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Entry
HPODL_04406 CDS
T08137
Name
(RefSeq) Protein involved in pre-mRNA splicing
KO
K12830
splicing factor 3B subunit 3
Organism
opa
Ogataea parapolymorpha
Pathway
opa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HPODL_04406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opa03021
]
HPODL_04406
03041 Spliceosome [BR:
opa03041
]
HPODL_04406
03036 Chromosome and associated proteins [BR:
opa03036
]
HPODL_04406
Transcription machinery [BR:
opa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
HPODL_04406
Spliceosome [BR:
opa03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
HPODL_04406
Complex B
HPODL_04406
Complex C
U2 SnRNP specific factors
HPODL_04406
Chromosome and associated proteins [BR:
opa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
HPODL_04406
TFTC complex
HPODL_04406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MMS1_N
CPSF_A
Coatomer_WDAD
Motif
Other DBs
NCBI-GeneID:
25773834
NCBI-ProteinID:
XP_013934679
UniProt:
W1QCM7
LinkDB
All DBs
Position
V:complement(1123327..1126938)
Genome browser
AA seq
1203 aa
AA seq
DB search
MSLNPDLFLYNLTIRPSVTAVKCCIGNFTGNRRQQEVVRATATTLELWKLNRNNGDFYKV
VAQNTFSHIRSIEALKSSGSDKDLLIITSDSGNLTVLEMNNEKGRFESVSNEPYFKTGLR
RISPGEYIAVDGRSRAAMISAIEKNKFVYKFTSDHRSRLQVSSPLEANKSKVLTFGVCGM
DVGFENPQFAALECDYSDFEEKLDKKMHKTLCYYELDIGLNHVVKKYSEEASFSSNFLLP
LPGGTQGPSGVLLCSEGIIQYKCLSKMTHTIPIPRRSGDKTRSRIVCGVVHTLKNSFFAL
LQSELGDLFKITLDYVVQDSDESRGEAGMVNSMEIQYFDTMPVCTSLLIFRAGFLYANCE
SGDQYLYQFDKLGDENQRKFSSQDYPDEVAVLSDETTLFEPRPLENLNLVNIVENINPLI
DAKLYNSNETTSLPVIYSLCGTGPRSALKVLNHELPFSEVVTQELPSVVQKVFVSKLNRD
DEYDKYIVLSFVDGTLVLRIGEDVEEVENSGLVLDTNTLGVFQVGSTALVQVHPNGVRQV
FYVDETPQKTIDWAPPAGIRVLHCSATNSQLAIALSNREIVYFELDDLDKLIEYNEHKEL
AAQITALTLGEVQAGTARFPYLLVACQDKTLTVFSTDPESTLEIVGEEILSSAASSLMAF
YMKDTAIVLNKDAGEDDEDEPELATSLLYVHIGMESGVYARLQMDPQTGELSNPRNKYTG
PRPVQLSKIEAVGQNAVCIFSARTYLGYTRPSEFKITPLTKPVFQHACSFRSEDIPENGV
LAVYGNSLTIMTIDQLENDTIIESIALRNTPKYMCDCTDKNGMMYVLEGDIDTKRDIEEE
RIEEYQQFGYPRAPGAWASCIQTVVVADKSVVQTIDLGDETAFRACWVNFESRPGEPFLA
VSSAKNQQLSPPRNDGAYIHLYRISSNGTLELFQTTKTEHLSLALTAFQGKLLVGAKNEL
ILYDIGQKQLVKRSSTRLECYEIVDLKTQGFRVIVSDVRDSVRYTVYKPLENSFVDFIDD
TMQRHVTRTLLLDYDTVVVGDKFGNISVLRCPEQISEMSDEDNHGFLVKMRRTKLDNPVN
YYVGDMPTFFQKGSLTIGGAESIIYGCLQGQMGCLYPMKSLSEINFFKELQRLIIHEFTS
LTDREYLKFKGYYNPPKNSIDGDLIEEYYRLGPEKRIRIATKMDRLPRDIDRRISDMRSR
IVY
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgtctctcaatccagacttgttcctgtacaacctgactattcggccctcagtcacggct
gttaagtgctgcataggcaattttaccggcaatagaagacaacaggaggttgtgagggct
acggccacgactcttgagctgtggaaattgaatagaaataatggtgacttctacaaagtg
gtggcacagaacactttcagtcatattagatcgatagaggctctgaagagcagtgggtca
gataaagatttgctgattatcacctcggacagcggaaatttgactgtattagagatgaat
aatgagaaaggacgattcgaaagcgtatctaacgaaccgtatttcaagacgggtttgcga
agaatttctcctggagagtacattgctgtggatggacgcagcagagctgccatgattagc
gccatcgagaaaaacaagtttgtctacaagttcacttcagatcacagaagtagactccaa
gtttcgtctccattggaagcgaataagtccaaggtcttaacatttggcgtctgtggaatg
gatgttgggtttgagaatccgcaatttgctgccttggagtgcgattactcggatttcgag
gaaaaactcgataaaaagatgcacaagaccttatgctactatgagctcgacattgggctc
aaccacgtggtgaaaaagtatagtgaggaggccagtttttcctcaaactttctgcttcct
cttcctggaggcacccagggtccttcaggggtgctgctatgctcggagggaataatccaa
tataaatgtctgtccaaaatgacgcacacaattcctattccaagacgatccggggacaag
acacgttcgcgaattgtctgtggagttgtgcacacgctgaaaaacagcttttttgcactc
ttacagagcgagcttggtgacctgttcaaaattactcttgactacgttgtccaggacagt
gacgagtctcgaggggaggccggaatggtgaactcgatggaaatacagtattttgatact
atgcctgtgtgcacgtcgctgttgatttttagagccggattcctttacgctaattgcgaa
tctggcgaccaatatctctatcagttcgacaagctgggagacgaaaaccagagaaaattc
agctctcaagattatccggatgaagttgctgttttaagcgacgagacaactctgtttgaa
ccacggccgctcgaaaatttgaatcttgtgaatatagtggagaacatcaacccgctgatc
gacgcaaaattatacaattccaatgagaccaccagtttgcctgtgatatactctctttgc
ggcacggggccccgctcggcactcaaggtgctgaaccacgagctgccatttagcgaggtt
gtcacccaagagctgccgtcggtggtgcaaaaggtgtttgtttcgaagctcaacagagac
gacgagtacgacaagtacatcgttctctcattcgtggacgggactttggttttgcgtatt
ggcgaggatgttgaggaagtggaaaatagtggcctggtgctcgatacaaacacgctgggc
gtttttcaggttggtagtactgcgcttgtccaggtgcatccaaacggcgtgagacaggtg
ttctacgtcgacgaaacgccccagaaaaccatcgactgggccccacctgctggaatccgc
gttctgcactgctctgcaaccaattcacagcttgctatcgcattatcaaaccgcgagatc
gtgtacttcgagctagatgatttggacaaattaatagagtacaacgagcacaaagagctc
gctgcccaaatcacagcgctcaccttgggagaggtgcaagcgggtactgccaggtttccg
tatttgctggttgcatgtcaggataaaacgctgacggttttttctacggacccggagtcc
actctcgagattgtcggcgaggagattttgagctcggcagcttcttctctaatggcattc
tatatgaaagacacggccattgtgctcaacaaagacgctggagaagacgacgaagacgag
cccgagctggctacctcgcttctgtacgtccacatcggcatggagagcggtgtgtatgcg
cggttgcagatggacccgcaaacgggcgagctgtcgaatccgcgaaacaaatatacgggt
ccacgccctgtgcagctgtccaagatcgaggccgtgggccagaatgcagtctgcattttc
tcagcccgtacttatttggggtatactcgtccttctgaattcaaaatcacaccgttgacg
aaaccggtgtttcagcacgcatgctcattcagaagcgaagacattccagagaacggagtg
ctggctgtctatggcaacagtttgacgattatgaccatcgaccagttggagaacgacacc
attatcgagagcattgcgctcagaaacactcctaaatacatgtgcgactgcaccgacaaa
aacggcatgatgtatgttctggagggcgacattgacaccaagcgcgacatcgaagaggag
cgcatcgaggagtatcagcaattcggctatccaagagcgcccggtgcgtgggccagctgt
attcagacggtcgtggtggcagacaaatcagtggtgcagacgatcgatctgggagacgaa
actgcgttcagggcgtgctgggtgaactttgagagccgcccgggggagccgtttttggcc
gtttcttcagccaagaaccagcaactcagcccgcctcgcaatgacggagcgtacatccat
ctttatcgcatctcctcgaatggcactctggagcttttccaaacgacaaaaacagaacat
ctctcgctggctcttacagccttccagggaaagttgctggtcggggccaagaacgagctc
atcttgtacgacatcggccagaaacagctggtgaaacggtccagcaccagactcgagtgt
tatgagattgtcgacctcaaaacgcaaggattccgggtcatcgttagcgacgtgcgcgat
agtgttcgatacacagtctacaagcccttggaaaactcgtttgtcgacttcatcgatgac
accatgcagcggcacgtgacccgcaccttgctactcgactacgacacagtcgtggttggc
gacaagttcggcaacatttcggttctgcggtgtcccgagcagatttcggagatgagcgac
gaggacaaccacggatttttggtgaagatgcgcaggacaaagctggacaatcctgtgaac
tactacgttggagacatgccgacgtttttccagaaaggctcgctcaccattggaggcgct
gagtcgatcatttacggctgtctacaaggacagatggggtgtctgtatccgatgaagagc
ttgtccgaaatcaacttcttcaaagagttgcagaggctgatcatacacgagtttacgtct
ttgacagatcgcgagtatctgaaatttaaaggctactacaacccgccgaaaaacagcatt
gacggagacctgatcgaggagtactatcgtctcggccccgagaaacggatccgcatagca
accaagatggataggttgccgcgggacatcgatcgccgcataagcgacatgcgatcgcgg
atcgtgtactag
DBGET
integrated database retrieval system
