Ogataea parapolymorpha: HPODL_04443
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Entry
HPODL_04443 CDS
T08137
Name
(RefSeq) Protein PCF11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
opa
Ogataea parapolymorpha
Pathway
opa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
HPODL_04443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opa03021
]
HPODL_04443
03019 Messenger RNA biogenesis [BR:
opa03019
]
HPODL_04443
Transcription machinery [BR:
opa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
HPODL_04443
Messenger RNA biogenesis [BR:
opa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
HPODL_04443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_C
Pfc11_Clp1_ID
CID
zf_PCFS4
VHS
ZT_dimer
Motif
Other DBs
NCBI-GeneID:
25773871
NCBI-ProteinID:
XP_013934718
UniProt:
W1QE35
LinkDB
All DBs
Position
V:1183974..1185422
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AA seq
482 aa
AA seq
DB search
MSSVQFGNDYYDSLQTLTFNSRPIIESHTQLAQENVEHAAEIVKAVEKRISKAIPTQKLF
ALYLLDSICKVVGSPYTRLFSINLYKTFTQTYSLVDDPTRVKMIKLFKTWKMANPVTGMP
LFNDDQLDLIEKFLIRATANNKVEEPLSKEVLLKDIDDLKRMVGQRLNRGADQKTKQRFE
LLDQLRNIISQPAQIPVQQLEVVRRQLAGIREDEYRRVQPPPFTQPIPTAPPGPASLPNI
PPVPASLPKIPTPAPTAAPAPGPAVFSTPELQKLLGLNPAKALTPQPSLQQQAPASSGLV
MLSIELSQVLLNNHKPTADEISLIYSSKPNQCSNCPKRFANTPEGAIARQQHLDWHFRTN
KKLKDTGKQLYNRAWYLNDAKWIEFKEDEIVGYTSDTLETNRVVMKEALSEEEVNKQIVA
IPEDSDNETVCGICREKLVGVFDDEMGEWIWRNAIEKKGRVYHYSCWVETKGNIRDRSPE
RK
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgttcagttcggaaacgactactacgactcactccagacgctcacgttcaat
tcgcggcccatcatagagagccacacgcagctggcgcaggagaacgtggagcacgcggcg
gaaatcgtcaaggctgtagagaagcggatctcaaaagccattcccacacagaaactgttc
gccctttatcttctagactcgatatgtaaagtggttggcagtccgtatactcggcttttt
agcataaacctgtataagacgtttacacagacatactcgcttgtcgacgacccgacccgc
gtcaaaatgatcaagctattcaagacatggaagatggctaacccagtaacgggaatgccc
ctgttcaacgacgaccagctggacctcatcgagaagtttcttattcgcgccaccgccaac
aataaggtcgaggagccgctttccaaagaagtcctcctcaaggacatcgacgacctgaaa
cgtatggttggccagcgactcaacagaggcgccgaccagaaaaccaagcagcgcttcgag
cttcttgatcagctgcgaaacatcatctcgcaaccggcccagatccccgtccagcagctc
gaagtggtacggagacagctcgcaggaatccgtgaagacgagtacagaagagtccagcca
ccgccgtttactcagccgattccgacggccccaccgggcccagcgtcgctgcccaacatc
cctcctgtgccagcgtcgctgccaaagatccctacgccggccccgactgctgctcctgcc
ccaggtcccgccgtgttctccacgcctgagttgcagaaacttctaggactcaacccagca
aaagctctcactcctcagccgtctttgcagcaacaggctcccgcatcttctggtcttgtg
atgttgtccattgagctgagccaggtgctactcaacaaccacaaacccacggcagacgag
atttctctaatctactcttccaagccgaaccagtgctcgaactgtccgaaacgtttcgcc
aacacgccagaaggcgccatagcgcgccagcagcacttagactggcattttcgcacgaac
aagaaattgaaggacacgggtaaacagctctacaacagggcgtggtatttaaacgacgca
aaatggatcgagttcaaggaagacgagatagtgggctacacgtcagacactctggaaacc
aaccgagtggtgatgaaggaggctctgtccgaggaggaggtcaacaagcagatagttgcc
attccggaagatagcgataacgagacggtgtgtggaatctgtagagaaaaattagttgga
gtgtttgacgacgagatgggcgaatggatctggcgaaacgccatagagaaaaagggcaga
gtgtaccattatagctgctgggtggagactaagggaaacatcagagaccggtcgcctgag
cggaagtaa
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