Ogataea parapolymorpha: HPODL_04460
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Entry
HPODL_04460 CDS
T08137
Name
(RefSeq) DNA topoisomerase 2-associated protein PAT1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
opa
Ogataea parapolymorpha
Pathway
opa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPODL_04460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opa03019
]
HPODL_04460
Messenger RNA biogenesis [BR:
opa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
HPODL_04460
mRNA degradation factors
5'-3' decay
Decapping complex
HPODL_04460
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
25773888
NCBI-ProteinID:
XP_013934740
UniProt:
W1QCW2
LinkDB
All DBs
Position
V:complement(<1215305..>1217707)
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AA seq
800 aa
AA seq
DB search
MSFFGFDPSGPPSSGEKDQKLDTLDFEETYEGLGEQDEDAFNDETFGADVKEIGSNFDFT
GGLKPASKPQTVNPNLSYAKAAQVDQVIAPMASLWNEEAKTADSASSQPASEQRVLSLEE
IEAKLRQPQQQVPQMPQMNPYMYQQQQQLLVAAMASGQFPNPAAAAQALAQGYFPPFQPG
VMPFMPFQAQQMMQQGALGQGQQPQQVQPPPAGLQVPQVPQVPQSAPAPVQQQQQQQQQQ
PALQAPQALQSPPVLNAASPPPHSSQPVPQAVEQKVPASASAPSSSATPAPQSVQQVGSS
DATGNFPPLGYDEKPRKQRPQRQNPENLTQEEREKLWRRQNKVSAIIRCSGFMNPRDKDF
VTRVQLSQIVTDDPYNEDFYCQVYRVLNSSVGEDDMSSIAQKYLDQSGHRLGGREKRADV
ALQRMQQQVSKAVTVAKERGERTGVLAKEGALGKVSVGSGKQPRKQLVINTTGSSDEVVV
PKENVYSKSSRAFQLSVIEDIYSQVLKLESLERENQERDSKDLWNALRLNDTIETSSTVV
SPFISVLSIDKAMKVFNRLFHFLNPEQKIKLMEAIFANLHNIDVVMKGSYANYVNENYEI
PKTEKSKIELFQMTVMKTLVLFVSESDFQQVLRFVALIVKGGNNNVLFLSTTKIGLSLIT
ILVSRLELIKQEFSAGLSPQDLAQWQTIYDHLFQALEGRLATIFPPYLSNDDARKVRNSE
SKSDDSYIWQFLASLSLAGLLSHQRIIVDEIRNEIFGSMGVSKALKESGDLQGAEKHLSN
LNLFLNVMGLKASESDITEL
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttttcggattcgatccatcaggacctccctcgtctggagagaaggaccagaaa
ctggacacgctcgattttgaggaaacctatgagggcctcggagagcaagatgaggacgct
ttcaacgacgagacgtttggagccgacgtgaaggaaatcgggtccaatttcgatttcaca
ggcggtctgaagcctgcctcgaaaccccagacagtcaatccaaatttgtcttacgcaaag
gccgcccaggtcgaccaggtgatcgcaccaatggcctctttgtggaacgaggaagcgaaa
acagctgactctgcgtcctcgcagccagcttcagaacaaagggtgttgtctctcgaagag
atcgaagctaagctccgtcaacctcaacaacaagtgccccagatgcctcagatgaaccct
tacatgtatcagcagcaacagcaacttttggttgcggccatggcctccggacagttccct
aaccctgcagccgctgcccaagcattggcccaaggctacttccctccgttccagccagga
gttatgcctttcatgccgttccaagcacagcaaatgatgcagcagggcgctttgggtcaa
ggacaacagccccagcaagtgcaaccacctcctgcgggtcttcaggtacctcaggtgcct
caagtgcctcaatcggctcccgctccagttcagcaacaacagcaacaacagcaacagcaa
ccagcattacaagctcctcaggctcttcagtccccccctgttctaaatgctgcttctcca
cctcctcactcttcccagcctgtgccacaggccgttgagcagaaggtgcctgcttcggct
tctgcaccttcctcatctgctacaccagctccccagtctgtccaacaggttggttcgagc
gatgctacgggaaacttccctcccctgggctatgatgaaaagccacggaagcaaagacct
cagagacaaaatccagagaatctgacacaagaagagagagagaagctttggagaagacag
aacaaagtgtcagcaattatcagatgttctggatttatgaacccaagagataaagacttt
gtgaccagggttcagctctctcagattgtcactgacgatccgtacaatgaggacttctat
tgtcaagtctaccgagtgctgaactcctctgtcggcgaagacgatatgagctccattgca
cagaaatatttagaccagtctggacatagattgggaggcagggagaagagggccgatgtg
gccctacagagaatgcaacagcaagtttccaaagccgtcactgttgctaaggagcgcgga
gaaagaaccggagtgcttgcaaaggaaggtgctttgggtaaagtgtctgttggctccggc
aaacagccaagaaagcagttggtgatcaataccacgggcagctccgacgaggttgttgtt
ccaaaggagaacgtgtactctaagtcttcaagagctttccagctctctgtgattgaagac
atctactcccaggttttgaagcttgaatctctggagcgtgaaaaccaagagcgggattcc
aaggacctttggaacgctcttcgtctcaatgacacaattgagacttccagtactgtcgtt
tctccattcatttctgtactgtctatcgacaaggcgatgaaagtgtttaacagactgttc
catttcctcaatcccgagcaaaaaattaagctgatggaggcgatttttgccaatctgcat
aacatcgacgtggtcatgaagggctcgtatgccaactacgtgaacgaaaactacgagatt
ccgaaaacagaaaagagtaagattgagcttttccagatgaccgtcatgaaaacgctagtt
ttatttgttagcgaatcggactttcagcaggttctacggtttgtggctttaatcgttaaa
ggcggaaataacaatgtgctatttttgtccacgacaaaaattggactctcgctgattacc
atacttgtttcgcgactggagctgatcaagcaggaattttctgccggactcagtccgcaa
gaccttgctcaatggcagactatctacgaccacctattccaagcattagaaggcagactg
gctactatcttcccgccgtacctttcgaacgatgacgcgcgcaaagtgcgtaattccgag
tcgaagagcgacgattcttacatttggcagttcttggcgtcgctctctcttgcgggtcta
ctaagtcatcaaagaataattgtcgatgaaattaggaacgaaatctttggcagcatgggt
gtgagcaaggctctcaaggagtctggcgatttgcagggtgccgagaaacatctttcgaat
ctcaatctgttcctgaatgtgatgggactgaaagcctcggaatcagatatcaccgaacta
taa
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