Ogataea parapolymorpha: HPODL_04643
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Entry
HPODL_04643 CDS
T08137
Name
(RefSeq) WD40 repeat-containing protein
KO
K12816
pre-mRNA-processing factor 17
Organism
opa
Ogataea parapolymorpha
Pathway
opa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HPODL_04643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
opa03041
]
HPODL_04643
Spliceosome [BR:
opa03041
]
Complex C
Other components
Step II factors
HPODL_04643
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
NBCH_WD40
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_SCAP
Beta-prop_WDR75_2nd
SdiA-regulated
Androgen_recep
Motif
Other DBs
NCBI-GeneID:
25774070
NCBI-ProteinID:
XP_013936458
UniProt:
W1QJ47
LinkDB
All DBs
Position
II:complement(201373..202839)
Genome browser
AA seq
488 aa
AA seq
DB search
MSLLGYASDSDDDANSQMSLVPAPVSESRKEPETQKSNGKRTITGFVETEVVDGLKFQRN
KRLYEQGPKDPENEQTKSRKQRAKELKRRRKNKGDPGELDGENAYRGPWASYSESEDDGE
LEEEEVQAPLEAASENGSEEEQTEEETTTFYGDSQYDYLGRTYMHVPNDVQTNLHKEPGS
QRCYVPKKKIHTFAGHARGVQCLQFFPNSGHLLLTCGNDSSIKLWDVYHKRKLLRGFYGH
MKPVKCVTFNSSGSHFLSCSYDETVKLWNTETGECEFKKKLDGIPNVVRYIPDNDNEFLV
GMSNKRIDHYDLKTGDVIQSYEHHTDAVNSLEFINDGENFVSSSSDKSLRIWEVKVNMPV
KLIADPKQFSMPFLKVHPKGFAFVAQSSDNTIQTFAASAEDKFKRNRDKTFTGHNSANYS
IGLQFTPDGRTLMSGDSHGFAFFWDWRSTELISKLKVSSKPITCIDSHPQESSMVALAGA
DGKVYLYD
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgctaggatacgccagcgactctgacgacgatgccaactcgcaaatgagcctt
gttcccgcgcctgtttcagagagccggaaggagccagaaacacaaaagtcaaacggaaaa
cggacaatcacaggctttgttgagacagaagtggtagacggcctaaaatttcagagaaat
aaaagattatacgaacagggaccaaaagacccagaaaacgaacaaaccaagtcccgaaaa
cagcgtgcaaaagaattgaaaagacgtcggaagaataaaggagatccaggggagctggac
ggtgaaaatgcatacagaggaccttgggccagctacagcgagagcgaagacgatggtgaa
ctagaggaagaagaagtgcaggcaccattagaagcagcctccgagaacggatcagaagaa
gaacaaactgaggaagaaaccaccaccttctacggtgactcgcaatatgactatctcggg
agaacgtatatgcacgttcctaacgacgtgcaaaccaacttacataaggagccaggaagc
cagcgctgctacgtgccgaaaaagaaaatacacacatttgccggacacgcacgaggtgtc
caatgcctgcaattctttcctaatagtggccatttgctgcttacctgtggaaacgactcg
tcaatcaaattatgggatgtatatcataaacggaaattgcttagaggattctatggacac
atgaagcctgtgaaatgcgtgacgttcaattcctcggggtctcactttttgagttgctcg
tacgacgaaacagtcaagctgtggaacacagagaccggcgagtgcgaattcaaaaaaaaa
ctggatggcattcccaacgttgtcagatatatccccgacaatgacaacgagtttctggtt
ggcatgtccaacaaaagaatcgatcattatgatctgaaaacaggcgacgtgatccagtcg
tacgagcaccacacagacgcggttaacagtctcgagttcattaacgatggggaaaatttt
gtgtcttcgtcgagcgacaagtcgctgcgcatctgggaagttaaagtcaacatgcccgta
aaactcatagccgaccccaaacagttttccatgccgtttttgaaagttcatcctaaaggt
ttcgcgtttgtcgcacaatcttccgacaacaccatccaaacatttgcagccagcgccgaa
gacaagttcaagcgaaacagagataaaacattcactggtcacaactccgccaattactcc
attgggctgcagtttacgcccgacgggagaactttaatgagcggcgactcgcacggattt
gcatttttctgggactggaggtccacagagctgatctccaagctcaaggtcagctccaag
ccgataacctgcatcgattcacatccccaagaaagtagcatggtggctctcgcaggagcc
gatgggaaggtgtatttgtacgattga
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